Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHROOM1Q2M3G4 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
SHROOM1Q2M3G4 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHROOM1Q2M3G4 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHROOM1Q2M3G4 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHROOM1Q2M3G4 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC15.84■□□□□ 0.13
SHROOM1Q2M3G4 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHROOM1Q2M3G4 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHROOM1Q2M3G4 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.84■□□□□ 0.13
SHROOM1Q2M3G4 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHROOM1Q2M3G4 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SHROOM1Q2M3G4 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC15.84■□□□□ 0.13
SHROOM1Q2M3G4 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
SHROOM1Q2M3G4 ZNF485-202ENST00000374435 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SHROOM1Q2M3G4 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
SHROOM1Q2M3G4 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC15.83■□□□□ 0.13
SHROOM1Q2M3G4 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
SHROOM1Q2M3G4 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
SHROOM1Q2M3G4 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
SHROOM1Q2M3G4 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
SHROOM1Q2M3G4 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
SHROOM1Q2M3G4 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC15.83■□□□□ 0.13
SHROOM1Q2M3G4 TBC1D3P1-201ENST00000590047 1693 ntBASIC15.83■□□□□ 0.13
SHROOM1Q2M3G4 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
SHROOM1Q2M3G4 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
SHROOM1Q2M3G4 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
SHROOM1Q2M3G4 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 HDGF-202ENST00000368206 960 ntTSL 5 BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 KRT19P4-201ENST00000443208 943 ntBASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 TREX1-203ENST00000456089 629 ntTSL 3 BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 RN7SL684P-201ENST00000465665 294 ntBASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 MTHFD2P7-201ENST00000483867 983 ntBASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 AL662899.2-201ENST00000503322 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 AC233724.9-201ENST00000511694 407 ntBASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 AC018846.1-201ENST00000568231 183 ntBASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 AC211476.2-201ENST00000608799 708 ntBASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 AC005746.3-201ENST00000614751 393 ntBASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 PINX1-201ENST00000314787 1545 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM1Q2M3G4 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 CTRL-205ENST00000574481 1721 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 HSD3B2-206ENST00000543831 1783 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 AMHR2-204ENST00000550311 1787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 ZNF493-208ENST00000599461 1769 ntBASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 AL359915.2-202ENST00000440150 2469 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 SNORA57-201ENST00000383870 149 ntBASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 KRT8P30-201ENST00000432100 650 ntBASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 HNRNPA3P12-201ENST00000437410 1063 ntBASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 MIR4254-201ENST00000581063 76 ntBASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 AL162731.1-201ENST00000613248 876 ntTSL 3 BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 AC011477.7-201ENST00000617163 1440 ntBASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 SLC26A8-202ENST00000394602 3144 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms