Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
PCDHA1Q9Y5I3 AC008764.7-201ENST00000593779 1081 ntBASIC25.68■■□□□ 1.7
PCDHA1Q9Y5I3 MAG-206ENST00000597035 542 ntTSL 4 BASIC25.68■■□□□ 1.7
PCDHA1Q9Y5I3 AC093323.1-202ENST00000635031 2045 ntBASIC25.68■■□□□ 1.7
PCDHA1Q9Y5I3 AC133637.1-201ENST00000624115 1537 ntBASIC25.68■■□□□ 1.7
PCDHA1Q9Y5I3 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC25.67■■□□□ 1.7
PCDHA1Q9Y5I3 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
PCDHA1Q9Y5I3 HYI-206ENST00000372434 1025 ntTSL 5 BASIC25.67■■□□□ 1.7
PCDHA1Q9Y5I3 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
PCDHA1Q9Y5I3 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
PCDHA1Q9Y5I3 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
PCDHA1Q9Y5I3 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
PCDHA1Q9Y5I3 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
PCDHA1Q9Y5I3 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
PCDHA1Q9Y5I3 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
PCDHA1Q9Y5I3 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC25.66■■□□□ 1.7
PCDHA1Q9Y5I3 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
PCDHA1Q9Y5I3 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
PCDHA1Q9Y5I3 AC091305.1-201ENST00000479476 895 ntBASIC25.66■■□□□ 1.7
PCDHA1Q9Y5I3 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC25.66■■□□□ 1.7
PCDHA1Q9Y5I3 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
PCDHA1Q9Y5I3 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC25.65■■□□□ 1.7
PCDHA1Q9Y5I3 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
PCDHA1Q9Y5I3 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
PCDHA1Q9Y5I3 AC027682.1-201ENST00000562846 899 ntBASIC25.65■■□□□ 1.7
PCDHA1Q9Y5I3 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC25.65■■□□□ 1.7
PCDHA1Q9Y5I3 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
PCDHA1Q9Y5I3 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC25.65■■□□□ 1.7
PCDHA1Q9Y5I3 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
PCDHA1Q9Y5I3 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
PCDHA1Q9Y5I3 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
PCDHA1Q9Y5I3 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
PCDHA1Q9Y5I3 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
PCDHA1Q9Y5I3 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
PCDHA1Q9Y5I3 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC25.64■■□□□ 1.69
PCDHA1Q9Y5I3 RASA4CP-201ENST00000424092 1398 ntBASIC25.64■■□□□ 1.69
PCDHA1Q9Y5I3 AL353803.4-201ENST00000565882 1934 ntBASIC25.64■■□□□ 1.69
PCDHA1Q9Y5I3 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
PCDHA1Q9Y5I3 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.69
PCDHA1Q9Y5I3 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PCDHA1Q9Y5I3 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC25.63■■□□□ 1.69
PCDHA1Q9Y5I3 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PCDHA1Q9Y5I3 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
PCDHA1Q9Y5I3 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
PCDHA1Q9Y5I3 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PCDHA1Q9Y5I3 AC099791.1-201ENST00000416440 715 ntBASIC25.63■■□□□ 1.69
PCDHA1Q9Y5I3 BX842568.3-201ENST00000418104 571 ntBASIC25.63■■□□□ 1.69
PCDHA1Q9Y5I3 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
PCDHA1Q9Y5I3 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC25.63■■□□□ 1.69
PCDHA1Q9Y5I3 AC233992.3-201ENST00000607491 485 ntBASIC25.63■■□□□ 1.69
PCDHA1Q9Y5I3 CA15P2-201ENST00000611168 834 ntBASIC25.63■■□□□ 1.69
PCDHA1Q9Y5I3 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
PCDHA1Q9Y5I3 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PCDHA1Q9Y5I3 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PCDHA1Q9Y5I3 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PCDHA1Q9Y5I3 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
PCDHA1Q9Y5I3 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
PCDHA1Q9Y5I3 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC25.62■■□□□ 1.69
PCDHA1Q9Y5I3 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
PCDHA1Q9Y5I3 SNX3-202ENST00000349379 890 ntTSL 2 BASIC25.62■■□□□ 1.69
PCDHA1Q9Y5I3 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC25.62■■□□□ 1.69
PCDHA1Q9Y5I3 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC25.62■■□□□ 1.69
PCDHA1Q9Y5I3 ZNRF2P3-201ENST00000424200 374 ntBASIC25.62■■□□□ 1.69
PCDHA1Q9Y5I3 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
PCDHA1Q9Y5I3 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC25.62■■□□□ 1.69
PCDHA1Q9Y5I3 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
PCDHA1Q9Y5I3 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC25.62■■□□□ 1.69
PCDHA1Q9Y5I3 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
PCDHA1Q9Y5I3 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC25.61■■□□□ 1.69
PCDHA1Q9Y5I3 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC25.61■■□□□ 1.69
PCDHA1Q9Y5I3 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC25.61■■□□□ 1.69
PCDHA1Q9Y5I3 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC25.61■■□□□ 1.69
PCDHA1Q9Y5I3 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
PCDHA1Q9Y5I3 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC25.61■■□□□ 1.69
PCDHA1Q9Y5I3 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
PCDHA1Q9Y5I3 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
PCDHA1Q9Y5I3 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC25.61■■□□□ 1.69
PCDHA1Q9Y5I3 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC25.6■■□□□ 1.69
PCDHA1Q9Y5I3 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
PCDHA1Q9Y5I3 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC25.6■■□□□ 1.69
PCDHA1Q9Y5I3 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC25.6■■□□□ 1.69
PCDHA1Q9Y5I3 AC105265.2-201ENST00000467189 838 ntBASIC25.6■■□□□ 1.69
PCDHA1Q9Y5I3 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
PCDHA1Q9Y5I3 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC25.6■■□□□ 1.69
PCDHA1Q9Y5I3 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
PCDHA1Q9Y5I3 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
PCDHA1Q9Y5I3 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
PCDHA1Q9Y5I3 SLC47A1P1-202ENST00000449666 945 ntBASIC25.59■■□□□ 1.69
PCDHA1Q9Y5I3 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC25.59■■□□□ 1.69
PCDHA1Q9Y5I3 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
PCDHA1Q9Y5I3 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
PCDHA1Q9Y5I3 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
PCDHA1Q9Y5I3 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC25.59■■□□□ 1.69
PCDHA1Q9Y5I3 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
PCDHA1Q9Y5I3 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
PCDHA1Q9Y5I3 ANOS2P-203ENST00000472227 1816 ntBASIC25.58■■□□□ 1.69
PCDHA1Q9Y5I3 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
PCDHA1Q9Y5I3 MIR935-201ENST00000401179 91 ntBASIC25.58■■□□□ 1.69
PCDHA1Q9Y5I3 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC25.58■■□□□ 1.69
PCDHA1Q9Y5I3 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC25.58■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms