Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA11Q9Y5H2 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.61■■□□□ 1.05
PCDHGA11Q9Y5H2 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA11Q9Y5H2 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA11Q9Y5H2 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA11Q9Y5H2 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA11Q9Y5H2 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA11Q9Y5H2 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.6■■□□□ 1.05
PCDHGA11Q9Y5H2 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA11Q9Y5H2 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA11Q9Y5H2 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA11Q9Y5H2 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA11Q9Y5H2 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA11Q9Y5H2 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA11Q9Y5H2 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA11Q9Y5H2 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
PCDHGA11Q9Y5H2 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA11Q9Y5H2 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA11Q9Y5H2 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA11Q9Y5H2 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA11Q9Y5H2 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA11Q9Y5H2 AC010997.5-201ENST00000609182 354 ntBASIC21.59■■□□□ 1.05
PCDHGA11Q9Y5H2 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.59■■□□□ 1.05
PCDHGA11Q9Y5H2 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.05
PCDHGA11Q9Y5H2 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHGA11Q9Y5H2 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHGA11Q9Y5H2 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
PCDHGA11Q9Y5H2 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.58■■□□□ 1.05
PCDHGA11Q9Y5H2 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
PCDHGA11Q9Y5H2 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PCDHGA11Q9Y5H2 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PCDHGA11Q9Y5H2 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PCDHGA11Q9Y5H2 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA11Q9Y5H2 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA11Q9Y5H2 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.57■■□□□ 1.04
PCDHGA11Q9Y5H2 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA11Q9Y5H2 TSPY9P-201ENST00000440215 945 ntBASIC21.57■■□□□ 1.04
PCDHGA11Q9Y5H2 TSPY11P-201ENST00000442607 1045 ntBASIC21.57■■□□□ 1.04
PCDHGA11Q9Y5H2 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.57■■□□□ 1.04
PCDHGA11Q9Y5H2 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.57■■□□□ 1.04
PCDHGA11Q9Y5H2 AC144652.1-201ENST00000609974 1624 ntBASIC21.57■■□□□ 1.04
PCDHGA11Q9Y5H2 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA11Q9Y5H2 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
PCDHGA11Q9Y5H2 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.57■■□□□ 1.04
PCDHGA11Q9Y5H2 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA11Q9Y5H2 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA11Q9Y5H2 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.56■■□□□ 1.04
PCDHGA11Q9Y5H2 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.56■■□□□ 1.04
PCDHGA11Q9Y5H2 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA11Q9Y5H2 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA11Q9Y5H2 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.56■■□□□ 1.04
PCDHGA11Q9Y5H2 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
PCDHGA11Q9Y5H2 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA11Q9Y5H2 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA11Q9Y5H2 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA11Q9Y5H2 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA11Q9Y5H2 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA11Q9Y5H2 AL353803.4-201ENST00000565882 1934 ntBASIC21.55■■□□□ 1.04
PCDHGA11Q9Y5H2 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.55■■□□□ 1.04
PCDHGA11Q9Y5H2 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA11Q9Y5H2 EP400NL-214ENST00000641289 2402 ntBASIC21.55■■□□□ 1.04
PCDHGA11Q9Y5H2 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA11Q9Y5H2 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.55■■□□□ 1.04
PCDHGA11Q9Y5H2 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA11Q9Y5H2 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA11Q9Y5H2 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA11Q9Y5H2 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
PCDHGA11Q9Y5H2 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA11Q9Y5H2 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA11Q9Y5H2 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA11Q9Y5H2 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.54■■□□□ 1.04
PCDHGA11Q9Y5H2 AC233723.2-201ENST00000623798 2106 ntBASIC21.54■■□□□ 1.04
PCDHGA11Q9Y5H2 AL035685.1-201ENST00000636663 812 ntBASIC21.54■■□□□ 1.04
PCDHGA11Q9Y5H2 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA11Q9Y5H2 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA11Q9Y5H2 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.54■■□□□ 1.04
PCDHGA11Q9Y5H2 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
PCDHGA11Q9Y5H2 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA11Q9Y5H2 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.53■■□□□ 1.04
PCDHGA11Q9Y5H2 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA11Q9Y5H2 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA11Q9Y5H2 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.53■■□□□ 1.04
PCDHGA11Q9Y5H2 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.53■■□□□ 1.04
PCDHGA11Q9Y5H2 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.53■■□□□ 1.04
PCDHGA11Q9Y5H2 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.53■■□□□ 1.04
PCDHGA11Q9Y5H2 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA11Q9Y5H2 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA11Q9Y5H2 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
PCDHGA11Q9Y5H2 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.52■■□□□ 1.04
PCDHGA11Q9Y5H2 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA11Q9Y5H2 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA11Q9Y5H2 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
PCDHGA11Q9Y5H2 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA11Q9Y5H2 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.52■■□□□ 1.04
PCDHGA11Q9Y5H2 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA11Q9Y5H2 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA11Q9Y5H2 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.52■■□□□ 1.04
PCDHGA11Q9Y5H2 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA11Q9Y5H2 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA11Q9Y5H2 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms