Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CUEDC1Q9NWM3 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CUEDC1Q9NWM3 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CUEDC1Q9NWM3 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.56■■□□□ 1.04
CUEDC1Q9NWM3 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CUEDC1Q9NWM3 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CUEDC1Q9NWM3 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.56■■□□□ 1.04
CUEDC1Q9NWM3 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.55■■□□□ 1.04
CUEDC1Q9NWM3 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CUEDC1Q9NWM3 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CUEDC1Q9NWM3 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CUEDC1Q9NWM3 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.55■■□□□ 1.04
CUEDC1Q9NWM3 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CUEDC1Q9NWM3 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
CUEDC1Q9NWM3 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CUEDC1Q9NWM3 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.55■■□□□ 1.04
CUEDC1Q9NWM3 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
CUEDC1Q9NWM3 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CUEDC1Q9NWM3 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CUEDC1Q9NWM3 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CUEDC1Q9NWM3 AL353803.4-201ENST00000565882 1934 ntBASIC21.55■■□□□ 1.04
CUEDC1Q9NWM3 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.55■■□□□ 1.04
CUEDC1Q9NWM3 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.55■■□□□ 1.04
CUEDC1Q9NWM3 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CUEDC1Q9NWM3 SRD5A1P1-201ENST00000442297 786 ntBASIC21.54■■□□□ 1.04
CUEDC1Q9NWM3 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CUEDC1Q9NWM3 DUSP8P5-201ENST00000422884 1815 ntBASIC21.54■■□□□ 1.04
CUEDC1Q9NWM3 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CUEDC1Q9NWM3 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CUEDC1Q9NWM3 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.54■■□□□ 1.04
CUEDC1Q9NWM3 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
CUEDC1Q9NWM3 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CUEDC1Q9NWM3 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.53■■□□□ 1.04
CUEDC1Q9NWM3 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.53■■□□□ 1.04
CUEDC1Q9NWM3 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CUEDC1Q9NWM3 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CUEDC1Q9NWM3 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CUEDC1Q9NWM3 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.53■■□□□ 1.04
CUEDC1Q9NWM3 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CUEDC1Q9NWM3 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
CUEDC1Q9NWM3 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CUEDC1Q9NWM3 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CUEDC1Q9NWM3 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CUEDC1Q9NWM3 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CUEDC1Q9NWM3 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CUEDC1Q9NWM3 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CUEDC1Q9NWM3 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CUEDC1Q9NWM3 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
CUEDC1Q9NWM3 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
CUEDC1Q9NWM3 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CUEDC1Q9NWM3 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CUEDC1Q9NWM3 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.51■■□□□ 1.03
CUEDC1Q9NWM3 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.03
CUEDC1Q9NWM3 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.51■■□□□ 1.03
CUEDC1Q9NWM3 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.51■■□□□ 1.03
CUEDC1Q9NWM3 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CUEDC1Q9NWM3 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CUEDC1Q9NWM3 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CUEDC1Q9NWM3 AC006455.2-201ENST00000429931 906 ntBASIC21.51■■□□□ 1.03
CUEDC1Q9NWM3 AC096631.2-201ENST00000436136 790 ntBASIC21.51■■□□□ 1.03
CUEDC1Q9NWM3 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CUEDC1Q9NWM3 RARRES2P6-201ENST00000567333 442 ntBASIC21.51■■□□□ 1.03
CUEDC1Q9NWM3 AC099791.2-201ENST00000605725 427 ntBASIC21.51■■□□□ 1.03
CUEDC1Q9NWM3 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
CUEDC1Q9NWM3 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CUEDC1Q9NWM3 DUSP8P3-201ENST00000399571 1760 ntBASIC21.51■■□□□ 1.03
CUEDC1Q9NWM3 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
CUEDC1Q9NWM3 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CUEDC1Q9NWM3 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CUEDC1Q9NWM3 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CUEDC1Q9NWM3 LINC01529-204ENST00000636474 1715 ntBASIC21.5■■□□□ 1.03
CUEDC1Q9NWM3 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CUEDC1Q9NWM3 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CUEDC1Q9NWM3 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CUEDC1Q9NWM3 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CUEDC1Q9NWM3 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.5■■□□□ 1.03
CUEDC1Q9NWM3 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.5■■□□□ 1.03
CUEDC1Q9NWM3 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CUEDC1Q9NWM3 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CUEDC1Q9NWM3 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.5■■□□□ 1.03
CUEDC1Q9NWM3 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CUEDC1Q9NWM3 FP325331.1-202ENST00000623531 1380 ntBASIC21.49■■□□□ 1.03
CUEDC1Q9NWM3 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.49■■□□□ 1.03
CUEDC1Q9NWM3 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CUEDC1Q9NWM3 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC21.49■■□□□ 1.03
CUEDC1Q9NWM3 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.49■■□□□ 1.03
CUEDC1Q9NWM3 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CUEDC1Q9NWM3 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.49■■□□□ 1.03
CUEDC1Q9NWM3 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.49■■□□□ 1.03
CUEDC1Q9NWM3 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
CUEDC1Q9NWM3 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CUEDC1Q9NWM3 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
CUEDC1Q9NWM3 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CUEDC1Q9NWM3 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CUEDC1Q9NWM3 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CUEDC1Q9NWM3 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CUEDC1Q9NWM3 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.48■■□□□ 1.03
CUEDC1Q9NWM3 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CUEDC1Q9NWM3 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.48■■□□□ 1.03
CUEDC1Q9NWM3 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms