Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CHMP1AQ9HD42 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CHMP1AQ9HD42 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
CHMP1AQ9HD42 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CHMP1AQ9HD42 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CHMP1AQ9HD42 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.65
CHMP1AQ9HD42 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CHMP1AQ9HD42 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CHMP1AQ9HD42 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CHMP1AQ9HD42 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CHMP1AQ9HD42 DUX4L18-201ENST00000553347 1267 ntBASIC19.08■□□□□ 0.64
CHMP1AQ9HD42 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CHMP1AQ9HD42 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
CHMP1AQ9HD42 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CHMP1AQ9HD42 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.08■□□□□ 0.64
CHMP1AQ9HD42 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CHMP1AQ9HD42 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CHMP1AQ9HD42 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP1AQ9HD42 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CHMP1AQ9HD42 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.07■□□□□ 0.64
CHMP1AQ9HD42 BHLHE23-202ENST00000612929 1109 ntBASIC19.07■□□□□ 0.64
CHMP1AQ9HD42 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.07■□□□□ 0.64
CHMP1AQ9HD42 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP1AQ9HD42 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP1AQ9HD42 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP1AQ9HD42 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP1AQ9HD42 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP1AQ9HD42 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CHMP1AQ9HD42 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP1AQ9HD42 ALDH1A3-203ENST00000557963 1670 ntBASIC19.06■□□□□ 0.64
CHMP1AQ9HD42 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP1AQ9HD42 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC19.06■□□□□ 0.64
CHMP1AQ9HD42 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC19.06■□□□□ 0.64
CHMP1AQ9HD42 AC022616.5-201ENST00000518796 181 ntBASIC19.06■□□□□ 0.64
CHMP1AQ9HD42 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP1AQ9HD42 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP1AQ9HD42 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.05■□□□□ 0.64
CHMP1AQ9HD42 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP1AQ9HD42 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC19.05■□□□□ 0.64
CHMP1AQ9HD42 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.05■□□□□ 0.64
CHMP1AQ9HD42 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP1AQ9HD42 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP1AQ9HD42 DUSP8P3-201ENST00000399571 1760 ntBASIC19.05■□□□□ 0.64
CHMP1AQ9HD42 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.05■□□□□ 0.64
CHMP1AQ9HD42 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP1AQ9HD42 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP1AQ9HD42 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.05■□□□□ 0.64
CHMP1AQ9HD42 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.04■□□□□ 0.64
CHMP1AQ9HD42 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP1AQ9HD42 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP1AQ9HD42 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP1AQ9HD42 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP1AQ9HD42 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP1AQ9HD42 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC19.04■□□□□ 0.64
CHMP1AQ9HD42 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP1AQ9HD42 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP1AQ9HD42 C1orf229-201ENST00000623686 2258 ntBASIC19.04■□□□□ 0.64
CHMP1AQ9HD42 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
CHMP1AQ9HD42 GUSBP5-202ENST00000510805 1989 ntBASIC19.04■□□□□ 0.64
CHMP1AQ9HD42 AC131274.2-201ENST00000580697 1507 ntBASIC19.04■□□□□ 0.64
CHMP1AQ9HD42 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP1AQ9HD42 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP1AQ9HD42 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP1AQ9HD42 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.02■□□□□ 0.64
CHMP1AQ9HD42 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP1AQ9HD42 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP1AQ9HD42 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
CHMP1AQ9HD42 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP1AQ9HD42 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP1AQ9HD42 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP1AQ9HD42 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC19.02■□□□□ 0.64
CHMP1AQ9HD42 MTX2-204ENST00000443241 799 ntTSL 3 BASIC19.02■□□□□ 0.64
CHMP1AQ9HD42 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.02■□□□□ 0.64
CHMP1AQ9HD42 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC19.02■□□□□ 0.64
CHMP1AQ9HD42 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19.02■□□□□ 0.64
CHMP1AQ9HD42 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP1AQ9HD42 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP1AQ9HD42 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP1AQ9HD42 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
CHMP1AQ9HD42 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CHMP1AQ9HD42 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms