Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC23.06■■□□□ 1.28
PCDH9Q9HC56 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC23.06■■□□□ 1.28
PCDH9Q9HC56 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC23.06■■□□□ 1.28
PCDH9Q9HC56 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDH9Q9HC56 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDH9Q9HC56 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDH9Q9HC56 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDH9Q9HC56 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC23.05■■□□□ 1.28
PCDH9Q9HC56 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
PCDH9Q9HC56 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
PCDH9Q9HC56 USF2-207ENST00000595068 1612 ntTSL 5 BASIC23.04■■□□□ 1.28
PCDH9Q9HC56 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC23.04■■□□□ 1.28
PCDH9Q9HC56 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PCDH9Q9HC56 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PCDH9Q9HC56 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC23.04■■□□□ 1.28
PCDH9Q9HC56 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PCDH9Q9HC56 AC010997.5-201ENST00000609182 354 ntBASIC23.04■■□□□ 1.28
PCDH9Q9HC56 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PCDH9Q9HC56 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PCDH9Q9HC56 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDH9Q9HC56 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
PCDH9Q9HC56 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDH9Q9HC56 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
PCDH9Q9HC56 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
PCDH9Q9HC56 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDH9Q9HC56 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
PCDH9Q9HC56 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDH9Q9HC56 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDH9Q9HC56 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDH9Q9HC56 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC23.03■■□□□ 1.28
PCDH9Q9HC56 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC23.03■■□□□ 1.28
PCDH9Q9HC56 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC23.03■■□□□ 1.28
PCDH9Q9HC56 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC23.03■■□□□ 1.28
PCDH9Q9HC56 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDH9Q9HC56 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDH9Q9HC56 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDH9Q9HC56 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC23.03■■□□□ 1.28
PCDH9Q9HC56 ECEL1P1-201ENST00000373592 1742 ntBASIC23.02■■□□□ 1.28
PCDH9Q9HC56 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
PCDH9Q9HC56 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
PCDH9Q9HC56 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
PCDH9Q9HC56 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC23.02■■□□□ 1.28
PCDH9Q9HC56 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC23.02■■□□□ 1.28
PCDH9Q9HC56 LINC00526-201ENST00000581067 1875 ntBASIC23.02■■□□□ 1.28
PCDH9Q9HC56 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.28
PCDH9Q9HC56 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
PCDH9Q9HC56 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.27
PCDH9Q9HC56 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.27
PCDH9Q9HC56 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PCDH9Q9HC56 REST-206ENST00000612429 1376 ntTSL 5 BASIC23.01■■□□□ 1.27
PCDH9Q9HC56 REST-207ENST00000616975 1370 ntTSL 5 BASIC23.01■■□□□ 1.27
PCDH9Q9HC56 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
PCDH9Q9HC56 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
PCDH9Q9HC56 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC23.01■■□□□ 1.27
PCDH9Q9HC56 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
PCDH9Q9HC56 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC23.01■■□□□ 1.27
PCDH9Q9HC56 CLTA-206ENST00000466396 695 ntTSL 2 BASIC23.01■■□□□ 1.27
PCDH9Q9HC56 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PCDH9Q9HC56 ESRRAP2-201ENST00000418437 1549 ntBASIC23.01■■□□□ 1.27
PCDH9Q9HC56 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PCDH9Q9HC56 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PCDH9Q9HC56 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
PCDH9Q9HC56 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
PCDH9Q9HC56 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
PCDH9Q9HC56 STK25-234ENST00000535007 2459 ntTSL 2 BASIC23■■□□□ 1.27
PCDH9Q9HC56 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC23■■□□□ 1.27
PCDH9Q9HC56 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC23■■□□□ 1.27
PCDH9Q9HC56 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
PCDH9Q9HC56 EXOG-217ENST00000630638 197 ntTSL 5 BASIC23■■□□□ 1.27
PCDH9Q9HC56 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
PCDH9Q9HC56 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
PCDH9Q9HC56 AL353803.4-201ENST00000565882 1934 ntBASIC23■■□□□ 1.27
PCDH9Q9HC56 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC23■■□□□ 1.27
PCDH9Q9HC56 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDH9Q9HC56 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
PCDH9Q9HC56 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC22.99■■□□□ 1.27
PCDH9Q9HC56 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC22.99■■□□□ 1.27
PCDH9Q9HC56 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDH9Q9HC56 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDH9Q9HC56 KRT16P3-201ENST00000439127 1283 ntBASIC22.99■■□□□ 1.27
PCDH9Q9HC56 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC22.99■■□□□ 1.27
PCDH9Q9HC56 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
PCDH9Q9HC56 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
PCDH9Q9HC56 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC22.98■■□□□ 1.27
PCDH9Q9HC56 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
PCDH9Q9HC56 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
PCDH9Q9HC56 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC22.98■■□□□ 1.27
PCDH9Q9HC56 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC22.98■■□□□ 1.27
PCDH9Q9HC56 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
PCDH9Q9HC56 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
PCDH9Q9HC56 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
PCDH9Q9HC56 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
PCDH9Q9HC56 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC22.98■■□□□ 1.27
PCDH9Q9HC56 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
PCDH9Q9HC56 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
PCDH9Q9HC56 LSR-203ENST00000360798 1963 ntTSL 2 BASIC22.98■■□□□ 1.27
PCDH9Q9HC56 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC22.97■■□□□ 1.27
PCDH9Q9HC56 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
PCDH9Q9HC56 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.97■■□□□ 1.27
PCDH9Q9HC56 LSM4-201ENST00000252816 986 ntTSL 2 BASIC22.97■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms