Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 ADM-207ENST00000530439 1839 ntTSL 2 BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00643Q86TS7 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LINC00643Q86TS7 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LINC00643Q86TS7 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
LINC00643Q86TS7 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC14.02□□□□□ -0.16
LINC00643Q86TS7 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
LINC00643Q86TS7 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC14.02□□□□□ -0.16
LINC00643Q86TS7 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC14.02□□□□□ -0.16
LINC00643Q86TS7 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
LINC00643Q86TS7 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC14.02□□□□□ -0.16
LINC00643Q86TS7 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
LINC00643Q86TS7 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC14.02□□□□□ -0.16
LINC00643Q86TS7 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LINC00643Q86TS7 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LINC00643Q86TS7 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LINC00643Q86TS7 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC14.02□□□□□ -0.17
LINC00643Q86TS7 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC14.02□□□□□ -0.17
LINC00643Q86TS7 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC14.02□□□□□ -0.17
LINC00643Q86TS7 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00643Q86TS7 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.17
LINC00643Q86TS7 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
LINC00643Q86TS7 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00643Q86TS7 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00643Q86TS7 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC14□□□□□ -0.17
LINC00643Q86TS7 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00643Q86TS7 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00643Q86TS7 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00643Q86TS7 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00643Q86TS7 AL157384.1-201ENST00000445995 2473 ntBASIC14□□□□□ -0.17
LINC00643Q86TS7 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00643Q86TS7 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00643Q86TS7 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00643Q86TS7 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00643Q86TS7 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC14□□□□□ -0.17
LINC00643Q86TS7 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
LINC00643Q86TS7 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00643Q86TS7 AC005229.4-201ENST00000610085 2198 ntBASIC14□□□□□ -0.17
LINC00643Q86TS7 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
LINC00643Q86TS7 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00643Q86TS7 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC14□□□□□ -0.17
LINC00643Q86TS7 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00643Q86TS7 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC14□□□□□ -0.17
LINC00643Q86TS7 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC14□□□□□ -0.17
LINC00643Q86TS7 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms