Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 TFPT-201ENST00000391757 774 ntTSL 5 BASIC25.88■■□□□ 1.73
KRT40Q6A162 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
KRT40Q6A162 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC25.88■■□□□ 1.73
KRT40Q6A162 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC25.88■■□□□ 1.73
KRT40Q6A162 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
KRT40Q6A162 AL353803.4-201ENST00000565882 1934 ntBASIC25.88■■□□□ 1.73
KRT40Q6A162 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
KRT40Q6A162 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC25.88■■□□□ 1.73
KRT40Q6A162 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC25.87■■□□□ 1.73
KRT40Q6A162 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
KRT40Q6A162 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC25.87■■□□□ 1.73
KRT40Q6A162 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC25.87■■□□□ 1.73
KRT40Q6A162 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
KRT40Q6A162 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC25.87■■□□□ 1.73
KRT40Q6A162 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC25.87■■□□□ 1.73
KRT40Q6A162 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC25.86■■□□□ 1.73
KRT40Q6A162 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
KRT40Q6A162 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC25.86■■□□□ 1.73
KRT40Q6A162 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
KRT40Q6A162 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC25.86■■□□□ 1.73
KRT40Q6A162 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC25.86■■□□□ 1.73
KRT40Q6A162 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC25.86■■□□□ 1.73
KRT40Q6A162 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
KRT40Q6A162 AC144652.1-201ENST00000609974 1624 ntBASIC25.85■■□□□ 1.73
KRT40Q6A162 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
KRT40Q6A162 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC25.85■■□□□ 1.73
KRT40Q6A162 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC25.85■■□□□ 1.73
KRT40Q6A162 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
KRT40Q6A162 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC25.84■■□□□ 1.73
KRT40Q6A162 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
KRT40Q6A162 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC25.84■■□□□ 1.73
KRT40Q6A162 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC25.83■■□□□ 1.73
KRT40Q6A162 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC25.83■■□□□ 1.73
KRT40Q6A162 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC25.83■■□□□ 1.73
KRT40Q6A162 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
KRT40Q6A162 MIR6724-1-201ENST00000616420 92 ntBASIC25.83■■□□□ 1.73
KRT40Q6A162 MIR6724-2-201ENST00000616483 92 ntBASIC25.83■■□□□ 1.73
KRT40Q6A162 MIR6724-4-201ENST00000617390 92 ntBASIC25.83■■□□□ 1.73
KRT40Q6A162 MIR6724-3-201ENST00000622482 92 ntBASIC25.83■■□□□ 1.73
KRT40Q6A162 AL117332.1-201ENST00000622628 974 ntBASIC25.83■■□□□ 1.73
KRT40Q6A162 AC009102.2-201ENST00000606772 1639 ntBASIC25.83■■□□□ 1.73
KRT40Q6A162 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC25.83■■□□□ 1.73
KRT40Q6A162 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
KRT40Q6A162 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC25.83■■□□□ 1.73
KRT40Q6A162 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
KRT40Q6A162 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
KRT40Q6A162 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC25.82■■□□□ 1.72
KRT40Q6A162 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC25.82■■□□□ 1.72
KRT40Q6A162 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC25.82■■□□□ 1.72
KRT40Q6A162 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
KRT40Q6A162 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
KRT40Q6A162 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
KRT40Q6A162 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
KRT40Q6A162 GALC-202ENST00000393568 2054 ntTSL 2 BASIC25.81■■□□□ 1.72
KRT40Q6A162 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
KRT40Q6A162 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
KRT40Q6A162 GUK1-205ENST00000366722 850 ntTSL 3 BASIC25.81■■□□□ 1.72
KRT40Q6A162 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC25.81■■□□□ 1.72
KRT40Q6A162 ASB1-202ENST00000409297 878 ntTSL 5 BASIC25.81■■□□□ 1.72
KRT40Q6A162 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC25.81■■□□□ 1.72
KRT40Q6A162 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
KRT40Q6A162 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC25.81■■□□□ 1.72
KRT40Q6A162 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
KRT40Q6A162 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC25.81■■□□□ 1.72
KRT40Q6A162 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC25.81■■□□□ 1.72
KRT40Q6A162 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC25.81■■□□□ 1.72
KRT40Q6A162 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
KRT40Q6A162 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
KRT40Q6A162 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
KRT40Q6A162 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
KRT40Q6A162 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC25.8■■□□□ 1.72
KRT40Q6A162 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC25.8■■□□□ 1.72
KRT40Q6A162 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC25.8■■□□□ 1.72
KRT40Q6A162 ZNRF2P3-201ENST00000424200 374 ntBASIC25.8■■□□□ 1.72
KRT40Q6A162 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC25.8■■□□□ 1.72
KRT40Q6A162 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC25.79■■□□□ 1.72
KRT40Q6A162 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC25.79■■□□□ 1.72
KRT40Q6A162 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
KRT40Q6A162 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC25.79■■□□□ 1.72
KRT40Q6A162 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
KRT40Q6A162 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC25.79■■□□□ 1.72
KRT40Q6A162 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
KRT40Q6A162 MIR4466-201ENST00000606121 54 ntBASIC25.79■■□□□ 1.72
KRT40Q6A162 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC25.79■■□□□ 1.72
KRT40Q6A162 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC25.78■■□□□ 1.72
KRT40Q6A162 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC25.78■■□□□ 1.72
KRT40Q6A162 C1orf229-201ENST00000623686 2258 ntBASIC25.78■■□□□ 1.72
KRT40Q6A162 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC25.78■■□□□ 1.72
KRT40Q6A162 RARRES2P6-201ENST00000567333 442 ntBASIC25.78■■□□□ 1.72
KRT40Q6A162 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC25.78■■□□□ 1.72
KRT40Q6A162 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC25.78■■□□□ 1.72
KRT40Q6A162 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
KRT40Q6A162 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC25.78■■□□□ 1.72
KRT40Q6A162 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC25.77■■□□□ 1.72
KRT40Q6A162 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC25.77■■□□□ 1.72
KRT40Q6A162 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC25.77■■□□□ 1.72
KRT40Q6A162 NKILA-201ENST00000613231 537 ntTSL 4 BASIC25.77■■□□□ 1.72
KRT40Q6A162 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC25.77■■□□□ 1.72
KRT40Q6A162 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
KRT40Q6A162 MIR3621-201ENST00000580529 85 ntBASIC25.76■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms