Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
CCDC58Q4VC31 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC58Q4VC31 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC58Q4VC31 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC58Q4VC31 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CCDC58Q4VC31 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC58Q4VC31 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC58Q4VC31 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC58Q4VC31 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC58Q4VC31 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC58Q4VC31 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC58Q4VC31 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC58Q4VC31 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC58Q4VC31 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.84■□□□□ 0.77
CCDC58Q4VC31 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CCDC58Q4VC31 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC58Q4VC31 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC58Q4VC31 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.84■□□□□ 0.77
CCDC58Q4VC31 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC58Q4VC31 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC58Q4VC31 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC58Q4VC31 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC58Q4VC31 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC58Q4VC31 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC58Q4VC31 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC58Q4VC31 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC58Q4VC31 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC58Q4VC31 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC58Q4VC31 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC58Q4VC31 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC58Q4VC31 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC19.83■□□□□ 0.77
CCDC58Q4VC31 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC19.83■□□□□ 0.77
CCDC58Q4VC31 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC58Q4VC31 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC19.83■□□□□ 0.77
CCDC58Q4VC31 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC58Q4VC31 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC58Q4VC31 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC58Q4VC31 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.82■□□□□ 0.76
CCDC58Q4VC31 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC58Q4VC31 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC58Q4VC31 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CCDC58Q4VC31 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC58Q4VC31 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC58Q4VC31 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC58Q4VC31 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CCDC58Q4VC31 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC58Q4VC31 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC58Q4VC31 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC58Q4VC31 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC58Q4VC31 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC58Q4VC31 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC58Q4VC31 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC58Q4VC31 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CCDC58Q4VC31 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC58Q4VC31 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC58Q4VC31 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 DUX4L9-201ENST00000449051 1259 ntBASIC19.8■□□□□ 0.76
CCDC58Q4VC31 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CCDC58Q4VC31 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC58Q4VC31 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC58Q4VC31 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC58Q4VC31 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC58Q4VC31 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC58Q4VC31 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC58Q4VC31 PKD1P6-201ENST00000343738 4769 ntBASIC19.79■□□□□ 0.76
CCDC58Q4VC31 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC58Q4VC31 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC19.79■□□□□ 0.76
CCDC58Q4VC31 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC58Q4VC31 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC58Q4VC31 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC58Q4VC31 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC58Q4VC31 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
CCDC58Q4VC31 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC58Q4VC31 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CCDC58Q4VC31 AL137060.1-201ENST00000618151 2648 ntBASIC19.78■□□□□ 0.76
CCDC58Q4VC31 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC58Q4VC31 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC58Q4VC31 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC58Q4VC31 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC19.78■□□□□ 0.76
CCDC58Q4VC31 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC58Q4VC31 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms