Protein–RNA interactions for Protein: P49746

THBS3, Thrombospondin-3, humanhuman

Predictions only

Length 956 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
THBS3P49746 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
THBS3P49746 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
THBS3P49746 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC18.34■□□□□ 0.53
THBS3P49746 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC18.34■□□□□ 0.53
THBS3P49746 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
THBS3P49746 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC18.34■□□□□ 0.53
THBS3P49746 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
THBS3P49746 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
THBS3P49746 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
THBS3P49746 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
THBS3P49746 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
THBS3P49746 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
THBS3P49746 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC18.34■□□□□ 0.53
THBS3P49746 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
THBS3P49746 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
THBS3P49746 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
THBS3P49746 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
THBS3P49746 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.53
THBS3P49746 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
THBS3P49746 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
THBS3P49746 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
THBS3P49746 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC18.33■□□□□ 0.53
THBS3P49746 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
THBS3P49746 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC18.33■□□□□ 0.52
THBS3P49746 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC18.33■□□□□ 0.52
THBS3P49746 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC18.33■□□□□ 0.52
THBS3P49746 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC18.33■□□□□ 0.52
THBS3P49746 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC18.33■□□□□ 0.52
THBS3P49746 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC18.33■□□□□ 0.52
THBS3P49746 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
THBS3P49746 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
THBS3P49746 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
THBS3P49746 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
THBS3P49746 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
THBS3P49746 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
THBS3P49746 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.33■□□□□ 0.52
THBS3P49746 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
THBS3P49746 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
THBS3P49746 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
THBS3P49746 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC18.32■□□□□ 0.52
THBS3P49746 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
THBS3P49746 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
THBS3P49746 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
THBS3P49746 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
THBS3P49746 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
THBS3P49746 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
THBS3P49746 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC18.32■□□□□ 0.52
THBS3P49746 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC18.32■□□□□ 0.52
THBS3P49746 AC131212.1-201ENST00000613771 668 ntBASIC18.32■□□□□ 0.52
THBS3P49746 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
THBS3P49746 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.32■□□□□ 0.52
THBS3P49746 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
THBS3P49746 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
THBS3P49746 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
THBS3P49746 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
THBS3P49746 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
THBS3P49746 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
THBS3P49746 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
THBS3P49746 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC18.31■□□□□ 0.52
THBS3P49746 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
THBS3P49746 BX664725.1-201ENST00000438252 379 ntBASIC18.31■□□□□ 0.52
THBS3P49746 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
THBS3P49746 KRT125P-201ENST00000546827 989 ntBASIC18.31■□□□□ 0.52
THBS3P49746 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
THBS3P49746 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
THBS3P49746 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
THBS3P49746 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC18.3■□□□□ 0.52
THBS3P49746 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.3■□□□□ 0.52
THBS3P49746 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC18.3■□□□□ 0.52
THBS3P49746 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
THBS3P49746 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
THBS3P49746 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
THBS3P49746 TK2-202ENST00000417693 1046 ntTSL 2 BASIC18.3■□□□□ 0.52
THBS3P49746 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
THBS3P49746 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
THBS3P49746 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
THBS3P49746 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
THBS3P49746 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
THBS3P49746 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
THBS3P49746 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.3■□□□□ 0.52
THBS3P49746 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
THBS3P49746 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
THBS3P49746 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
THBS3P49746 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
THBS3P49746 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
THBS3P49746 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
THBS3P49746 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC18.29■□□□□ 0.52
THBS3P49746 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
THBS3P49746 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
THBS3P49746 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
THBS3P49746 AL356441.2-201ENST00000443009 864 ntBASIC18.29■□□□□ 0.52
THBS3P49746 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC18.29■□□□□ 0.52
THBS3P49746 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC18.29■□□□□ 0.52
THBS3P49746 SNX5-217ENST00000606557 1087 ntBASIC18.29■□□□□ 0.52
THBS3P49746 AC137630.3-201ENST00000607245 391 ntBASIC18.29■□□□□ 0.52
THBS3P49746 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
THBS3P49746 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
THBS3P49746 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
THBS3P49746 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
THBS3P49746 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms