Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.59■■□□□ 1.05
HNF4AP41235 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.59■■□□□ 1.05
HNF4AP41235 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HNF4AP41235 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
HNF4AP41235 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.58■■□□□ 1.05
HNF4AP41235 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HNF4AP41235 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HNF4AP41235 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.58■■□□□ 1.05
HNF4AP41235 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
HNF4AP41235 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HNF4AP41235 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
HNF4AP41235 AL353803.4-201ENST00000565882 1934 ntBASIC21.58■■□□□ 1.04
HNF4AP41235 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
HNF4AP41235 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.58■■□□□ 1.04
HNF4AP41235 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.58■■□□□ 1.04
HNF4AP41235 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
HNF4AP41235 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
HNF4AP41235 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
HNF4AP41235 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
HNF4AP41235 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HNF4AP41235 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HNF4AP41235 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HNF4AP41235 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
HNF4AP41235 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
HNF4AP41235 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.56■■□□□ 1.04
HNF4AP41235 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.56■■□□□ 1.04
HNF4AP41235 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HNF4AP41235 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.56■■□□□ 1.04
HNF4AP41235 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HNF4AP41235 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
HNF4AP41235 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HNF4AP41235 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HNF4AP41235 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
HNF4AP41235 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.55■■□□□ 1.04
HNF4AP41235 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.55■■□□□ 1.04
HNF4AP41235 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HNF4AP41235 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HNF4AP41235 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HNF4AP41235 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.55■■□□□ 1.04
HNF4AP41235 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HNF4AP41235 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HNF4AP41235 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HNF4AP41235 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.55■■□□□ 1.04
HNF4AP41235 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.54■■□□□ 1.04
HNF4AP41235 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HNF4AP41235 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.54■■□□□ 1.04
HNF4AP41235 FP325331.1-202ENST00000623531 1380 ntBASIC21.54■■□□□ 1.04
HNF4AP41235 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.54■■□□□ 1.04
HNF4AP41235 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HNF4AP41235 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.54■■□□□ 1.04
HNF4AP41235 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HNF4AP41235 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.54■■□□□ 1.04
HNF4AP41235 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
HNF4AP41235 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HNF4AP41235 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
HNF4AP41235 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HNF4AP41235 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
HNF4AP41235 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.53■■□□□ 1.04
HNF4AP41235 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HNF4AP41235 AL117332.1-201ENST00000622628 974 ntBASIC21.53■■□□□ 1.04
HNF4AP41235 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HNF4AP41235 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.53■■□□□ 1.04
HNF4AP41235 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.53■■□□□ 1.04
HNF4AP41235 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HNF4AP41235 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HNF4AP41235 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
HNF4AP41235 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.52■■□□□ 1.04
HNF4AP41235 AL356740.2-201ENST00000601559 647 ntBASIC21.52■■□□□ 1.04
HNF4AP41235 AC131212.1-201ENST00000613771 668 ntBASIC21.52■■□□□ 1.04
HNF4AP41235 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HNF4AP41235 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
HNF4AP41235 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HNF4AP41235 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HNF4AP41235 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.03
HNF4AP41235 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.52■■□□□ 1.03
HNF4AP41235 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
HNF4AP41235 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
HNF4AP41235 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
HNF4AP41235 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HNF4AP41235 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HNF4AP41235 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HNF4AP41235 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.51■■□□□ 1.03
HNF4AP41235 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
HNF4AP41235 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
HNF4AP41235 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HNF4AP41235 LINC01529-204ENST00000636474 1715 ntBASIC21.51■■□□□ 1.03
HNF4AP41235 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
HNF4AP41235 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
HNF4AP41235 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
HNF4AP41235 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.51■■□□□ 1.03
HNF4AP41235 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.51■■□□□ 1.03
HNF4AP41235 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HNF4AP41235 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HNF4AP41235 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HNF4AP41235 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.5■■□□□ 1.03
HNF4AP41235 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.5■■□□□ 1.03
HNF4AP41235 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HNF4AP41235 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HNF4AP41235 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.5■■□□□ 1.03
HNF4AP41235 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms