Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSX2P35548 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
MSX2P35548 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSX2P35548 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.27■■□□□ 1
MSX2P35548 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSX2P35548 AC131274.2-201ENST00000580697 1507 ntBASIC21.27■■□□□ 1
MSX2P35548 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.27■■□□□ 1
MSX2P35548 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
MSX2P35548 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
MSX2P35548 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.27■■□□□ 1
MSX2P35548 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
MSX2P35548 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
MSX2P35548 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.27■□□□□ 0.99
MSX2P35548 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
MSX2P35548 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.26■□□□□ 0.99
MSX2P35548 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.26■□□□□ 0.99
MSX2P35548 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSX2P35548 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSX2P35548 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.26■□□□□ 0.99
MSX2P35548 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.26■□□□□ 0.99
MSX2P35548 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.26■□□□□ 0.99
MSX2P35548 AC133552.2-201ENST00000619106 1032 ntBASIC21.26■□□□□ 0.99
MSX2P35548 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSX2P35548 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.26■□□□□ 0.99
MSX2P35548 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSX2P35548 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSX2P35548 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSX2P35548 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSX2P35548 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSX2P35548 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSX2P35548 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.26■□□□□ 0.99
MSX2P35548 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MSX2P35548 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSX2P35548 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSX2P35548 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSX2P35548 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MSX2P35548 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSX2P35548 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSX2P35548 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSX2P35548 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSX2P35548 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.24■□□□□ 0.99
MSX2P35548 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
MSX2P35548 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.24■□□□□ 0.99
MSX2P35548 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.24■□□□□ 0.99
MSX2P35548 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSX2P35548 AL592295.1-201ENST00000400984 884 ntBASIC21.24■□□□□ 0.99
MSX2P35548 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.24■□□□□ 0.99
MSX2P35548 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSX2P35548 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
MSX2P35548 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSX2P35548 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.24■□□□□ 0.99
MSX2P35548 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSX2P35548 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.24■□□□□ 0.99
MSX2P35548 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSX2P35548 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSX2P35548 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.23■□□□□ 0.99
MSX2P35548 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSX2P35548 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSX2P35548 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSX2P35548 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSX2P35548 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSX2P35548 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC21.23■□□□□ 0.99
MSX2P35548 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
MSX2P35548 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSX2P35548 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
MSX2P35548 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.23■□□□□ 0.99
MSX2P35548 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
MSX2P35548 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.23■□□□□ 0.99
MSX2P35548 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.23■□□□□ 0.99
MSX2P35548 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.23■□□□□ 0.99
MSX2P35548 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSX2P35548 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSX2P35548 AC026310.3-201ENST00000625186 2373 ntBASIC21.22■□□□□ 0.99
MSX2P35548 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
MSX2P35548 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSX2P35548 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSX2P35548 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSX2P35548 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
MSX2P35548 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSX2P35548 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSX2P35548 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.21■□□□□ 0.99
MSX2P35548 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSX2P35548 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
MSX2P35548 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSX2P35548 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
MSX2P35548 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSX2P35548 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSX2P35548 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
MSX2P35548 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSX2P35548 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSX2P35548 MIR639-201ENST00000384974 98 ntBASIC21.21■□□□□ 0.99
MSX2P35548 SPCS2P3-201ENST00000500401 656 ntBASIC21.21■□□□□ 0.99
MSX2P35548 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSX2P35548 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSX2P35548 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSX2P35548 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSX2P35548 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.2■□□□□ 0.98
MSX2P35548 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSX2P35548 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.2■□□□□ 0.98
MSX2P35548 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms