Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL9A1P20849 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.21■■□□□ 1.31
COL9A1P20849 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
COL9A1P20849 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL9A1P20849 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
COL9A1P20849 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
COL9A1P20849 ECEL1P3-201ENST00000427961 737 ntBASIC23.2■■□□□ 1.3
COL9A1P20849 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC23.2■■□□□ 1.3
COL9A1P20849 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC23.2■■□□□ 1.3
COL9A1P20849 STK32C-205ENST00000456004 607 ntTSL 2 BASIC23.2■■□□□ 1.3
COL9A1P20849 AC083906.2-201ENST00000511578 360 ntBASIC23.2■■□□□ 1.3
COL9A1P20849 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC23.2■■□□□ 1.3
COL9A1P20849 AL138781.1-201ENST00000566567 1274 ntBASIC23.2■■□□□ 1.3
COL9A1P20849 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC23.2■■□□□ 1.3
COL9A1P20849 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
COL9A1P20849 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.2■■□□□ 1.3
COL9A1P20849 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
COL9A1P20849 AC091060.1-201ENST00000623524 1766 ntBASIC23.19■■□□□ 1.3
COL9A1P20849 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL9A1P20849 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC23.19■■□□□ 1.3
COL9A1P20849 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC23.19■■□□□ 1.3
COL9A1P20849 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
COL9A1P20849 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
COL9A1P20849 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL9A1P20849 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC23.19■■□□□ 1.3
COL9A1P20849 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC23.19■■□□□ 1.3
COL9A1P20849 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
COL9A1P20849 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
COL9A1P20849 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL9A1P20849 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
COL9A1P20849 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL9A1P20849 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL9A1P20849 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC23.18■■□□□ 1.3
COL9A1P20849 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL9A1P20849 WWOX-218ENST00000627394 894 ntTSL 5 BASIC23.18■■□□□ 1.3
COL9A1P20849 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.18■■□□□ 1.3
COL9A1P20849 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
COL9A1P20849 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL9A1P20849 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL9A1P20849 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC23.17■■□□□ 1.3
COL9A1P20849 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC23.17■■□□□ 1.3
COL9A1P20849 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC23.17■■□□□ 1.3
COL9A1P20849 LSR-205ENST00000427250 1606 ntTSL 2 BASIC23.17■■□□□ 1.3
COL9A1P20849 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL9A1P20849 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL9A1P20849 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL9A1P20849 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC23.16■■□□□ 1.3
COL9A1P20849 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC23.16■■□□□ 1.3
COL9A1P20849 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC23.16■■□□□ 1.3
COL9A1P20849 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL9A1P20849 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL9A1P20849 IGHV3-19-201ENST00000521488 291 ntBASIC23.16■■□□□ 1.3
COL9A1P20849 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.16■■□□□ 1.3
COL9A1P20849 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC23.16■■□□□ 1.3
COL9A1P20849 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC23.16■■□□□ 1.3
COL9A1P20849 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
COL9A1P20849 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL9A1P20849 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL9A1P20849 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL9A1P20849 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL9A1P20849 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL9A1P20849 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL9A1P20849 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
COL9A1P20849 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC23.15■■□□□ 1.3
COL9A1P20849 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC23.15■■□□□ 1.3
COL9A1P20849 MIR3181-201ENST00000578512 73 ntBASIC23.15■■□□□ 1.3
COL9A1P20849 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC23.15■■□□□ 1.3
COL9A1P20849 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
COL9A1P20849 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL9A1P20849 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.15■■□□□ 1.3
COL9A1P20849 AC009102.2-201ENST00000606772 1639 ntBASIC23.15■■□□□ 1.3
COL9A1P20849 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL9A1P20849 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC23.14■■□□□ 1.3
COL9A1P20849 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC23.14■■□□□ 1.3
COL9A1P20849 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
COL9A1P20849 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
COL9A1P20849 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
COL9A1P20849 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.14■■□□□ 1.29
COL9A1P20849 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL9A1P20849 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL9A1P20849 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL9A1P20849 AC098590.1-201ENST00000468126 897 ntBASIC23.14■■□□□ 1.29
COL9A1P20849 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
COL9A1P20849 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC23.14■■□□□ 1.29
COL9A1P20849 MDK-213ENST00000617138 635 ntTSL 2 BASIC23.14■■□□□ 1.29
COL9A1P20849 AC011767.1-201ENST00000617410 1153 ntBASIC23.14■■□□□ 1.29
COL9A1P20849 AL022069.1-201ENST00000568025 1636 ntBASIC23.14■■□□□ 1.29
COL9A1P20849 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC23.14■■□□□ 1.29
COL9A1P20849 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.14■■□□□ 1.29
COL9A1P20849 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL9A1P20849 AC006455.2-201ENST00000429931 906 ntBASIC23.13■■□□□ 1.29
COL9A1P20849 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL9A1P20849 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC23.13■■□□□ 1.29
COL9A1P20849 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
COL9A1P20849 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC23.13■■□□□ 1.29
COL9A1P20849 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
COL9A1P20849 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
COL9A1P20849 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL9A1P20849 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
COL9A1P20849 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms