Protein–RNA interactions for Protein: P03956

MMP1, Interstitial collagenase, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP1P03956 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
MMP1P03956 AL139246.5-201ENST00000606645 996 ntBASIC25.72■■□□□ 1.71
MMP1P03956 NKILA-201ENST00000613231 537 ntTSL 4 BASIC25.72■■□□□ 1.71
MMP1P03956 C17orf82-201ENST00000623772 1530 ntBASIC25.72■■□□□ 1.71
MMP1P03956 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC25.72■■□□□ 1.71
MMP1P03956 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC25.72■■□□□ 1.71
MMP1P03956 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
MMP1P03956 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
MMP1P03956 FP325331.1-202ENST00000623531 1380 ntBASIC25.71■■□□□ 1.71
MMP1P03956 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
MMP1P03956 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC25.71■■□□□ 1.71
MMP1P03956 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
MMP1P03956 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC25.71■■□□□ 1.71
MMP1P03956 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC25.71■■□□□ 1.71
MMP1P03956 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
MMP1P03956 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC25.71■■□□□ 1.71
MMP1P03956 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
MMP1P03956 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
MMP1P03956 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
MMP1P03956 AL117332.1-201ENST00000622628 974 ntBASIC25.71■■□□□ 1.71
MMP1P03956 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
MMP1P03956 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
MMP1P03956 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
MMP1P03956 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC25.7■■□□□ 1.7
MMP1P03956 AK3-203ENST00000447596 705 ntTSL 2 BASIC25.7■■□□□ 1.7
MMP1P03956 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
MMP1P03956 LINC01529-204ENST00000636474 1715 ntBASIC25.7■■□□□ 1.7
MMP1P03956 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
MMP1P03956 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC25.7■■□□□ 1.7
MMP1P03956 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC25.7■■□□□ 1.7
MMP1P03956 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
MMP1P03956 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
MMP1P03956 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC25.69■■□□□ 1.7
MMP1P03956 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
MMP1P03956 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
MMP1P03956 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
MMP1P03956 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC25.69■■□□□ 1.7
MMP1P03956 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC25.69■■□□□ 1.7
MMP1P03956 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC25.69■■□□□ 1.7
MMP1P03956 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC25.69■■□□□ 1.7
MMP1P03956 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC25.69■■□□□ 1.7
MMP1P03956 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC25.69■■□□□ 1.7
MMP1P03956 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
MMP1P03956 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC25.68■■□□□ 1.7
MMP1P03956 AC131281.2-201ENST00000520478 145 ntBASIC25.68■■□□□ 1.7
MMP1P03956 TRIR-202ENST00000588213 841 ntTSL 3 BASIC25.68■■□□□ 1.7
MMP1P03956 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC25.68■■□□□ 1.7
MMP1P03956 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
MMP1P03956 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC25.68■■□□□ 1.7
MMP1P03956 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
MMP1P03956 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC25.68■■□□□ 1.7
MMP1P03956 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
MMP1P03956 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC25.67■■□□□ 1.7
MMP1P03956 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
MMP1P03956 NALT1-201ENST00000429224 738 ntTSL 5 BASIC25.67■■□□□ 1.7
MMP1P03956 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC25.67■■□□□ 1.7
MMP1P03956 MIR3621-201ENST00000580529 85 ntBASIC25.67■■□□□ 1.7
MMP1P03956 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
MMP1P03956 GCA-201ENST00000233612 1694 ntTSL 2 BASIC25.67■■□□□ 1.7
MMP1P03956 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC25.67■■□□□ 1.7
MMP1P03956 RPP21-222ENST00000433076 577 ntTSL 2 BASIC25.66■■□□□ 1.7
MMP1P03956 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC25.66■■□□□ 1.7
MMP1P03956 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
MMP1P03956 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
MMP1P03956 GALC-202ENST00000393568 2054 ntTSL 2 BASIC25.65■■□□□ 1.7
MMP1P03956 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
MMP1P03956 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
MMP1P03956 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
MMP1P03956 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
MMP1P03956 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
MMP1P03956 C1orf229-201ENST00000623686 2258 ntBASIC25.65■■□□□ 1.7
MMP1P03956 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC25.65■■□□□ 1.7
MMP1P03956 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
MMP1P03956 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC25.65■■□□□ 1.7
MMP1P03956 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
MMP1P03956 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC25.65■■□□□ 1.7
MMP1P03956 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC25.65■■□□□ 1.7
MMP1P03956 DUX4L4-201ENST00000566884 1269 ntBASIC25.65■■□□□ 1.7
MMP1P03956 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
MMP1P03956 RALB-208ENST00000631312 311 ntTSL 5 BASIC25.65■■□□□ 1.7
MMP1P03956 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
MMP1P03956 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
MMP1P03956 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC25.65■■□□□ 1.7
MMP1P03956 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
MMP1P03956 VGF-203ENST00000611537 1622 ntTSL 5 BASIC25.64■■□□□ 1.7
MMP1P03956 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC25.64■■□□□ 1.7
MMP1P03956 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
MMP1P03956 AL356740.2-201ENST00000601559 647 ntBASIC25.64■■□□□ 1.7
MMP1P03956 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC25.64■■□□□ 1.7
MMP1P03956 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.69
MMP1P03956 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
MMP1P03956 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
MMP1P03956 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
MMP1P03956 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
MMP1P03956 SRR-208ENST00000576848 588 ntTSL 4 BASIC25.63■■□□□ 1.69
MMP1P03956 RASSF1-AS1-201ENST00000629828 790 ntBASIC25.63■■□□□ 1.69
MMP1P03956 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC25.63■■□□□ 1.69
MMP1P03956 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC25.63■■□□□ 1.69
MMP1P03956 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC25.63■■□□□ 1.69
MMP1P03956 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC25.63■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms