Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LDLRP01130 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.41■■□□□ 1.02
LDLRP01130 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
LDLRP01130 AC096631.2-201ENST00000436136 790 ntBASIC21.41■■□□□ 1.02
LDLRP01130 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.41■■□□□ 1.02
LDLRP01130 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.41■■□□□ 1.02
LDLRP01130 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.41■■□□□ 1.02
LDLRP01130 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.41■■□□□ 1.02
LDLRP01130 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LDLRP01130 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LDLRP01130 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
LDLRP01130 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LDLRP01130 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.4■■□□□ 1.02
LDLRP01130 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LDLRP01130 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.4■■□□□ 1.02
LDLRP01130 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.4■■□□□ 1.02
LDLRP01130 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LDLRP01130 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
LDLRP01130 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
LDLRP01130 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LDLRP01130 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LDLRP01130 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LDLRP01130 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.4■■□□□ 1.02
LDLRP01130 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.4■■□□□ 1.02
LDLRP01130 AC133561.4-201ENST00000566112 224 ntBASIC21.4■■□□□ 1.02
LDLRP01130 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
LDLRP01130 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LDLRP01130 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LDLRP01130 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
LDLRP01130 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.39■■□□□ 1.02
LDLRP01130 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.39■■□□□ 1.02
LDLRP01130 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
LDLRP01130 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
LDLRP01130 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LDLRP01130 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
LDLRP01130 AC120024.1-201ENST00000562672 995 ntBASIC21.39■■□□□ 1.01
LDLRP01130 MIR3621-201ENST00000580529 85 ntBASIC21.39■■□□□ 1.01
LDLRP01130 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.39■■□□□ 1.01
LDLRP01130 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.39■■□□□ 1.01
LDLRP01130 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.39■■□□□ 1.01
LDLRP01130 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
LDLRP01130 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.39■■□□□ 1.01
LDLRP01130 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LDLRP01130 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LDLRP01130 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.38■■□□□ 1.01
LDLRP01130 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
LDLRP01130 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.38■■□□□ 1.01
LDLRP01130 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.38■■□□□ 1.01
LDLRP01130 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
LDLRP01130 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.38■■□□□ 1.01
LDLRP01130 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.38■■□□□ 1.01
LDLRP01130 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
LDLRP01130 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LDLRP01130 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
LDLRP01130 AC137767.1-201ENST00000602918 1920 ntBASIC21.37■■□□□ 1.01
LDLRP01130 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
LDLRP01130 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LDLRP01130 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LDLRP01130 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LDLRP01130 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LDLRP01130 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.37■■□□□ 1.01
LDLRP01130 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.37■■□□□ 1.01
LDLRP01130 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.37■■□□□ 1.01
LDLRP01130 ECEL1P1-201ENST00000373592 1742 ntBASIC21.37■■□□□ 1.01
LDLRP01130 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LDLRP01130 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.37■■□□□ 1.01
LDLRP01130 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LDLRP01130 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
LDLRP01130 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LDLRP01130 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.36■■□□□ 1.01
LDLRP01130 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
LDLRP01130 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
LDLRP01130 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
LDLRP01130 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.36■■□□□ 1.01
LDLRP01130 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.36■■□□□ 1.01
LDLRP01130 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.36■■□□□ 1.01
LDLRP01130 RARRES2P6-201ENST00000567333 442 ntBASIC21.36■■□□□ 1.01
LDLRP01130 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LDLRP01130 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LDLRP01130 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LDLRP01130 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LDLRP01130 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
LDLRP01130 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
LDLRP01130 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LDLRP01130 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LDLRP01130 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
LDLRP01130 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
LDLRP01130 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LDLRP01130 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LDLRP01130 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LDLRP01130 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LDLRP01130 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LDLRP01130 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
LDLRP01130 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LDLRP01130 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.34■■□□□ 1.01
LDLRP01130 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.34■■□□□ 1.01
LDLRP01130 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.34■■□□□ 1.01
LDLRP01130 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
LDLRP01130 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
LDLRP01130 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms