Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.82■■□□□ 1.08
VPS4BO75351 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS4BO75351 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS4BO75351 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.82■■□□□ 1.08
VPS4BO75351 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
VPS4BO75351 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.82■■□□□ 1.08
VPS4BO75351 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
VPS4BO75351 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
VPS4BO75351 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.81■■□□□ 1.08
VPS4BO75351 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.81■■□□□ 1.08
VPS4BO75351 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
VPS4BO75351 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.8■■□□□ 1.08
VPS4BO75351 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS4BO75351 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VPS4BO75351 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
VPS4BO75351 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.8■■□□□ 1.08
VPS4BO75351 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS4BO75351 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VPS4BO75351 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS4BO75351 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VPS4BO75351 AC021242.3-201ENST00000607598 1377 ntBASIC21.8■■□□□ 1.08
VPS4BO75351 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.8■■□□□ 1.08
VPS4BO75351 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.8■■□□□ 1.08
VPS4BO75351 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VPS4BO75351 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS4BO75351 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS4BO75351 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS4BO75351 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.8■■□□□ 1.08
VPS4BO75351 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS4BO75351 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS4BO75351 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS4BO75351 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
VPS4BO75351 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS4BO75351 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS4BO75351 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.79■■□□□ 1.08
VPS4BO75351 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
VPS4BO75351 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.79■■□□□ 1.08
VPS4BO75351 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.79■■□□□ 1.08
VPS4BO75351 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS4BO75351 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.79■■□□□ 1.08
VPS4BO75351 GUSBP5-202ENST00000510805 1989 ntBASIC21.79■■□□□ 1.08
VPS4BO75351 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VPS4BO75351 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.79■■□□□ 1.08
VPS4BO75351 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS4BO75351 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS4BO75351 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
VPS4BO75351 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VPS4BO75351 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS4BO75351 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS4BO75351 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.78■■□□□ 1.08
VPS4BO75351 AC092028.1-203ENST00000608262 953 ntBASIC21.78■■□□□ 1.08
VPS4BO75351 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS4BO75351 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.78■■□□□ 1.08
VPS4BO75351 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS4BO75351 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.77■■□□□ 1.08
VPS4BO75351 ESRRAP2-201ENST00000418437 1549 ntBASIC21.77■■□□□ 1.08
VPS4BO75351 AC005837.3-201ENST00000612163 286 ntBASIC21.77■■□□□ 1.08
VPS4BO75351 ECEL1P1-201ENST00000373592 1742 ntBASIC21.77■■□□□ 1.08
VPS4BO75351 LINC00526-201ENST00000581067 1875 ntBASIC21.77■■□□□ 1.08
VPS4BO75351 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS4BO75351 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
VPS4BO75351 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS4BO75351 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.76■■□□□ 1.07
VPS4BO75351 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
VPS4BO75351 AC127496.7-201ENST00000625110 1798 ntBASIC21.76■■□□□ 1.07
VPS4BO75351 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS4BO75351 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS4BO75351 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
VPS4BO75351 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.75■■□□□ 1.07
VPS4BO75351 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.75■■□□□ 1.07
VPS4BO75351 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
VPS4BO75351 EP400NL-214ENST00000641289 2402 ntBASIC21.75■■□□□ 1.07
VPS4BO75351 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS4BO75351 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.75■■□□□ 1.07
VPS4BO75351 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.75■■□□□ 1.07
VPS4BO75351 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC21.75■■□□□ 1.07
VPS4BO75351 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS4BO75351 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS4BO75351 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VPS4BO75351 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.74■■□□□ 1.07
VPS4BO75351 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS4BO75351 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
VPS4BO75351 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
VPS4BO75351 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS4BO75351 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS4BO75351 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
VPS4BO75351 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS4BO75351 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS4BO75351 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.73■■□□□ 1.07
VPS4BO75351 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS4BO75351 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS4BO75351 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
VPS4BO75351 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VPS4BO75351 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.73■■□□□ 1.07
VPS4BO75351 AC110285.6-201ENST00000617652 491 ntBASIC21.73■■□□□ 1.07
VPS4BO75351 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS4BO75351 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS4BO75351 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS4BO75351 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS4BO75351 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms