Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
PRKNO60260 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.77■□□□□ 0.92
PRKNO60260 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.77■□□□□ 0.92
PRKNO60260 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
PRKNO60260 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.77■□□□□ 0.92
PRKNO60260 AC092171.4-201ENST00000609130 632 ntBASIC20.77■□□□□ 0.92
PRKNO60260 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PRKNO60260 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PRKNO60260 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.77■□□□□ 0.91
PRKNO60260 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PRKNO60260 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PRKNO60260 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PRKNO60260 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
PRKNO60260 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.76■□□□□ 0.91
PRKNO60260 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
PRKNO60260 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
PRKNO60260 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
PRKNO60260 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.76■□□□□ 0.91
PRKNO60260 DUX4L19-201ENST00000557448 1267 ntBASIC20.76■□□□□ 0.91
PRKNO60260 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PRKNO60260 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
PRKNO60260 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.76■□□□□ 0.91
PRKNO60260 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PRKNO60260 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PRKNO60260 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.76■□□□□ 0.91
PRKNO60260 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PRKNO60260 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
PRKNO60260 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
PRKNO60260 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PRKNO60260 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PRKNO60260 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.75■□□□□ 0.91
PRKNO60260 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.75■□□□□ 0.91
PRKNO60260 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.75■□□□□ 0.91
PRKNO60260 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.75■□□□□ 0.91
PRKNO60260 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PRKNO60260 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.75■□□□□ 0.91
PRKNO60260 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PRKNO60260 AC144652.1-201ENST00000609974 1624 ntBASIC20.75■□□□□ 0.91
PRKNO60260 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PRKNO60260 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PRKNO60260 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PRKNO60260 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PRKNO60260 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PRKNO60260 C9orf163-202ENST00000624034 2573 ntBASIC20.74■□□□□ 0.91
PRKNO60260 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.74■□□□□ 0.91
PRKNO60260 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.74■□□□□ 0.91
PRKNO60260 MIR3181-201ENST00000578512 73 ntBASIC20.74■□□□□ 0.91
PRKNO60260 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.74■□□□□ 0.91
PRKNO60260 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PRKNO60260 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.74■□□□□ 0.91
PRKNO60260 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
PRKNO60260 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PRKNO60260 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PRKNO60260 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
PRKNO60260 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.73■□□□□ 0.91
PRKNO60260 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.73■□□□□ 0.91
PRKNO60260 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.73■□□□□ 0.91
PRKNO60260 AL353803.4-201ENST00000565882 1934 ntBASIC20.73■□□□□ 0.91
PRKNO60260 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.73■□□□□ 0.91
PRKNO60260 AL031432.3-201ENST00000607698 485 ntBASIC20.73■□□□□ 0.91
PRKNO60260 pRNA.6-201ENST00000610482 90 ntBASIC20.73■□□□□ 0.91
PRKNO60260 pRNA.5-201ENST00000612139 90 ntBASIC20.73■□□□□ 0.91
PRKNO60260 AC005837.3-201ENST00000612163 286 ntBASIC20.73■□□□□ 0.91
PRKNO60260 pRNA.11-201ENST00000618423 90 ntBASIC20.73■□□□□ 0.91
PRKNO60260 pRNA.13-201ENST00000619112 90 ntBASIC20.73■□□□□ 0.91
PRKNO60260 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
PRKNO60260 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PRKNO60260 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PRKNO60260 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
PRKNO60260 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PRKNO60260 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PRKNO60260 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.72■□□□□ 0.91
PRKNO60260 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PRKNO60260 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.72■□□□□ 0.91
PRKNO60260 MIR4767-201ENST00000582827 78 ntBASIC20.72■□□□□ 0.91
PRKNO60260 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.72■□□□□ 0.91
PRKNO60260 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
PRKNO60260 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
PRKNO60260 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PRKNO60260 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.72■□□□□ 0.91
PRKNO60260 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.72■□□□□ 0.91
PRKNO60260 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.72■□□□□ 0.91
PRKNO60260 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
PRKNO60260 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PRKNO60260 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PRKNO60260 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PRKNO60260 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PRKNO60260 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.71■□□□□ 0.91
PRKNO60260 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.71■□□□□ 0.91
PRKNO60260 AC133561.4-201ENST00000566112 224 ntBASIC20.71■□□□□ 0.91
PRKNO60260 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PRKNO60260 AC019069.1-201ENST00000610008 1333 ntBASIC20.71■□□□□ 0.91
PRKNO60260 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
PRKNO60260 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PRKNO60260 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PRKNO60260 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PRKNO60260 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PRKNO60260 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
PRKNO60260 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.7■□□□□ 0.9
PRKNO60260 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms