Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
TRAV3A0A0B4J244 TK2-202ENST00000417693 1046 ntTSL 2 BASIC17.96■□□□□ 0.47
TRAV3A0A0B4J244 SENP5-202ENST00000419026 973 ntTSL 3 BASIC17.96■□□□□ 0.47
TRAV3A0A0B4J244 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
TRAV3A0A0B4J244 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV3A0A0B4J244 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV3A0A0B4J244 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC17.96■□□□□ 0.47
TRAV3A0A0B4J244 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.46
TRAV3A0A0B4J244 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
TRAV3A0A0B4J244 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
TRAV3A0A0B4J244 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
TRAV3A0A0B4J244 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
TRAV3A0A0B4J244 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC17.95■□□□□ 0.46
TRAV3A0A0B4J244 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV3A0A0B4J244 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
TRAV3A0A0B4J244 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV3A0A0B4J244 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV3A0A0B4J244 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV3A0A0B4J244 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV3A0A0B4J244 ECEL1P1-201ENST00000373592 1742 ntBASIC17.95■□□□□ 0.46
TRAV3A0A0B4J244 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC17.95■□□□□ 0.46
TRAV3A0A0B4J244 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV3A0A0B4J244 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV3A0A0B4J244 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV3A0A0B4J244 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV3A0A0B4J244 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV3A0A0B4J244 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV3A0A0B4J244 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV3A0A0B4J244 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC17.94■□□□□ 0.46
TRAV3A0A0B4J244 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC17.94■□□□□ 0.46
TRAV3A0A0B4J244 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC17.94■□□□□ 0.46
TRAV3A0A0B4J244 TK2-216ENST00000564917 1156 ntTSL 3 BASIC17.94■□□□□ 0.46
TRAV3A0A0B4J244 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV3A0A0B4J244 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV3A0A0B4J244 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC17.94■□□□□ 0.46
TRAV3A0A0B4J244 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV3A0A0B4J244 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV3A0A0B4J244 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV3A0A0B4J244 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC17.94■□□□□ 0.46
TRAV3A0A0B4J244 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV3A0A0B4J244 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV3A0A0B4J244 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV3A0A0B4J244 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV3A0A0B4J244 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC17.93■□□□□ 0.46
TRAV3A0A0B4J244 AC137630.3-201ENST00000607245 391 ntBASIC17.93■□□□□ 0.46
TRAV3A0A0B4J244 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV3A0A0B4J244 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV3A0A0B4J244 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
TRAV3A0A0B4J244 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV3A0A0B4J244 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
TRAV3A0A0B4J244 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV3A0A0B4J244 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC17.92■□□□□ 0.46
TRAV3A0A0B4J244 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
TRAV3A0A0B4J244 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV3A0A0B4J244 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
TRAV3A0A0B4J244 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC17.92■□□□□ 0.46
TRAV3A0A0B4J244 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV3A0A0B4J244 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV3A0A0B4J244 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
TRAV3A0A0B4J244 AL031848.2-201ENST00000607670 837 ntBASIC17.92■□□□□ 0.46
TRAV3A0A0B4J244 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC17.92■□□□□ 0.46
TRAV3A0A0B4J244 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV3A0A0B4J244 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV3A0A0B4J244 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
TRAV3A0A0B4J244 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV3A0A0B4J244 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV3A0A0B4J244 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC17.92■□□□□ 0.46
TRAV3A0A0B4J244 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV3A0A0B4J244 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV3A0A0B4J244 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV3A0A0B4J244 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV3A0A0B4J244 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV3A0A0B4J244 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV3A0A0B4J244 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV3A0A0B4J244 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC17.91■□□□□ 0.46
TRAV3A0A0B4J244 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC17.91■□□□□ 0.46
TRAV3A0A0B4J244 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC17.91■□□□□ 0.46
TRAV3A0A0B4J244 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC17.91■□□□□ 0.46
TRAV3A0A0B4J244 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC17.91■□□□□ 0.46
TRAV3A0A0B4J244 ESRRAP2-201ENST00000418437 1549 ntBASIC17.91■□□□□ 0.46
TRAV3A0A0B4J244 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV3A0A0B4J244 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC17.91■□□□□ 0.46
TRAV3A0A0B4J244 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
TRAV3A0A0B4J244 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV3A0A0B4J244 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV3A0A0B4J244 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV3A0A0B4J244 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
TRAV3A0A0B4J244 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC17.9■□□□□ 0.46
TRAV3A0A0B4J244 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV3A0A0B4J244 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV3A0A0B4J244 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
TRAV3A0A0B4J244 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC17.9■□□□□ 0.46
TRAV3A0A0B4J244 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC17.9■□□□□ 0.46
TRAV3A0A0B4J244 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV3A0A0B4J244 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV3A0A0B4J244 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV3A0A0B4J244 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC17.9■□□□□ 0.46
TRAV3A0A0B4J244 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
TRAV3A0A0B4J244 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV3A0A0B4J244 AC144652.1-201ENST00000609974 1624 ntBASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms