Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 AC140113.1-201ENST00000603467 169 ntBASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 AL009176.1-201ENST00000607876 650 ntBASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 SLC6A6P1-201ENST00000413933 1850 ntBASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 AF013593.1-201ENST00000458074 1487 ntBASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 PPT1-213ENST00000641319 2388 ntBASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 TP73-211ENST00000604074 4806 ntTSL 5 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 EEF1DP2-201ENST00000433698 843 ntBASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 STK24P1-201ENST00000455035 1291 ntBASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 NEU3-207ENST00000534628 746 ntTSL 2 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 MIR4326-201ENST00000582203 59 ntBASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 AC018635.2-201ENST00000608625 364 ntBASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 AC107464.3-201ENST00000609172 737 ntBASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 AL161773.1-201ENST00000624845 863 ntBASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 AC005618.3-201ENST00000624928 458 ntBASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 LINC00244-201ENST00000625073 613 ntBASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 AC025183.3-201ENST00000623526 1482 ntBASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
TRIM39Q9HCM9 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms