Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
SHANK3Q9BYB0 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
SHANK3Q9BYB0 PPP1R11-204ENST00000376769 1689 ntTSL 2 BASIC17■□□□□ 0.31
SHANK3Q9BYB0 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SHANK3Q9BYB0 RTN3-210ENST00000540798 3124 ntTSL 1 (best) BASIC17■□□□□ 0.31
SHANK3Q9BYB0 LYRM4-205ENST00000464010 1401 ntTSL 3 BASIC17■□□□□ 0.31
SHANK3Q9BYB0 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
SHANK3Q9BYB0 LINGO1-AS1-201ENST00000558691 1720 ntTSL 1 (best) BASIC17■□□□□ 0.31
SHANK3Q9BYB0 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
SHANK3Q9BYB0 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 OSER1-AS1-202ENST00000437730 1563 ntTSL 5 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 GGT8P-201ENST00000418938 532 ntBASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 SNAP25-AS1-202ENST00000426491 804 ntTSL 5 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 AC079742.1-201ENST00000434951 357 ntTSL 3 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 C2orf27AP2-201ENST00000438438 555 ntBASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 AC106748.1-201ENST00000454801 384 ntBASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 ARL17B-207ENST00000575960 731 ntAPPRIS ALT2 TSL 3 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 AC021683.4-201ENST00000623348 1099 ntBASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 SRSF5-201ENST00000394366 1638 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 FHL2-208ENST00000409807 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 AC099689.1-201ENST00000624383 1302 ntBASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 NPTN-201ENST00000345330 2444 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 M1AP-201ENST00000290536 2543 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 DYRK4-201ENST00000010132 1840 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 F2-205ENST00000530231 1849 ntTSL 5 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 DDX6P2-201ENST00000619520 1455 ntBASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 AC023908.3-201ENST00000564211 3047 ntBASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 PPM1K-201ENST00000295908 1940 ntTSL 5 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 AL357054.1-201ENST00000407035 1227 ntBASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 AC006967.2-201ENST00000426169 432 ntTSL 3 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 UCMA-202ENST00000463405 763 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 GINS4-203ENST00000518671 1158 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 RPL30-213ENST00000523172 274 ntTSL 5 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 DEGS2-202ENST00000553834 421 ntTSL 3 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 BCAR1P1-201ENST00000553953 636 ntBASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 MT1L-201ENST00000565768 411 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 AC010547.1-202ENST00000567341 230 ntTSL 2 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 RN7SL5P-201ENST00000581458 321 ntBASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 SNRPD2-203ENST00000585392 379 ntTSL 3 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 AC008982.1-201ENST00000594769 963 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 AC004832.1-204ENST00000610737 1018 ntTSL 5 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 RN7SL341P-201ENST00000613745 298 ntBASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 LINC00869-208ENST00000621156 737 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 AC068987.3-201ENST00000637934 1195 ntTSL 5 BASIC16.99■□□□□ 0.31
SHANK3Q9BYB0 HDGF-203ENST00000368209 2171 ntTSL 2 BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 LILRA2-204ENST00000391738 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 TGM5-207ENST00000622115 2202 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 IL19-201ENST00000270218 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 LIPC-204ENST00000433326 1484 ntTSL 2 BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 ALDH3B2-204ENST00000530069 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 RPL19P20-201ENST00000415648 591 ntBASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 YIPF7-202ENST00000415895 1196 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 CYP2F2P-201ENST00000437853 1056 ntBASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 AL353803.1-201ENST00000439014 800 ntTSL 2 BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 AL365194.1-201ENST00000440032 361 ntTSL 3 BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 AC097658.2-201ENST00000512715 624 ntTSL 3 BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 BMS1P8-203ENST00000567036 614 ntTSL 3 BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 AC005154.1-227ENST00000579174 755 ntTSL 3 BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 SMIM22-207ENST00000589721 822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 AC241585.2-202ENST00000621798 1015 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 AL592295.4-201ENST00000636161 997 ntTSL 4 BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 ECM1-203ENST00000369049 1925 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 AC116903.2-201ENST00000561674 1304 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 METTL22-203ENST00000561758 1312 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHANK3Q9BYB0 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 TRNT1-202ENST00000280591 2180 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 ABCD3-201ENST00000315713 884 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms