Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGB1P09429 PI4KAP2-201ENST00000360806 2080 ntBASIC16.25■□□□□ 0.19
HMGB1P09429 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGB1P09429 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 PGM3-201ENST00000283977 2219 ntTSL 5 BASIC16.25■□□□□ 0.19
HMGB1P09429 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC16.25■□□□□ 0.19
HMGB1P09429 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
HMGB1P09429 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
HMGB1P09429 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 AC234782.1-201ENST00000451950 919 ntBASIC16.25■□□□□ 0.19
HMGB1P09429 BUD31-205ENST00000456893 512 ntTSL 5 BASIC16.25■□□□□ 0.19
HMGB1P09429 PRSS3P1-201ENST00000503996 742 ntBASIC16.25■□□□□ 0.19
HMGB1P09429 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC16.25■□□□□ 0.19
HMGB1P09429 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC16.25■□□□□ 0.19
HMGB1P09429 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC16.25■□□□□ 0.19
HMGB1P09429 KRT8P2-201ENST00000556193 944 ntBASIC16.25■□□□□ 0.19
HMGB1P09429 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
HMGB1P09429 TPM1-223ENST00000560445 485 ntTSL 3 BASIC16.25■□□□□ 0.19
HMGB1P09429 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGB1P09429 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC16.25■□□□□ 0.19
HMGB1P09429 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC16.25■□□□□ 0.19
HMGB1P09429 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC16.25■□□□□ 0.19
HMGB1P09429 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGB1P09429 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 CEP112-202ENST00000392769 3517 ntAPPRIS P4 TSL 5 BASIC16.25■□□□□ 0.19
HMGB1P09429 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
HMGB1P09429 DGCR9-201ENST00000609630 2415 ntBASIC16.25■□□□□ 0.19
HMGB1P09429 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
HMGB1P09429 B4GALT4-201ENST00000359213 2385 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
HMGB1P09429 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGB1P09429 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB1P09429 GABRR2-201ENST00000402938 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB1P09429 AL445209.1-201ENST00000607269 3491 ntBASIC16.24■□□□□ 0.19
HMGB1P09429 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB1P09429 SEC13-203ENST00000383801 1479 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGB1P09429 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB1P09429 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC16.24■□□□□ 0.19
HMGB1P09429 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB1P09429 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
HMGB1P09429 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB1P09429 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGB1P09429 CICP9-201ENST00000444451 1913 ntBASIC16.24■□□□□ 0.19
HMGB1P09429 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
HMGB1P09429 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGB1P09429 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC16.24■□□□□ 0.19
HMGB1P09429 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC16.24■□□□□ 0.19
HMGB1P09429 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGB1P09429 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC16.24■□□□□ 0.19
HMGB1P09429 RN7SL564P-201ENST00000496309 250 ntBASIC16.24■□□□□ 0.19
HMGB1P09429 ORAOV1P1-201ENST00000503108 395 ntBASIC16.24■□□□□ 0.19
HMGB1P09429 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC16.24■□□□□ 0.19
HMGB1P09429 FGFR3P5-201ENST00000564496 886 ntBASIC16.24■□□□□ 0.19
HMGB1P09429 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC16.24■□□□□ 0.19
HMGB1P09429 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC16.24■□□□□ 0.19
HMGB1P09429 AC132812.1-201ENST00000583145 892 ntBASIC16.24■□□□□ 0.19
HMGB1P09429 MIR4522-201ENST00000584932 87 ntBASIC16.24■□□□□ 0.19
HMGB1P09429 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGB1P09429 AC084346.2-201ENST00000607097 949 ntBASIC16.24■□□□□ 0.19
HMGB1P09429 AC012531.1-201ENST00000562848 2680 ntBASIC16.24■□□□□ 0.19
HMGB1P09429 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB1P09429 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB1P09429 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB1P09429 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGB1P09429 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB1P09429 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
HMGB1P09429 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB1P09429 ALG8-202ENST00000376156 1677 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGB1P09429 RMND5B-212ENST00000542098 1681 ntTSL 5 BASIC16.24■□□□□ 0.19
HMGB1P09429 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGB1P09429 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
HMGB1P09429 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 SLC5A11-202ENST00000424767 2399 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGB1P09429 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGB1P09429 AC115284.2-201ENST00000624646 2054 ntBASIC16.23■□□□□ 0.19
HMGB1P09429 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 GPN1-211ENST00000610189 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 AP002761.4-201ENST00000565433 3361 ntBASIC16.23■□□□□ 0.19
HMGB1P09429 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
HMGB1P09429 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
HMGB1P09429 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 SLC6A6P1-201ENST00000413933 1850 ntBASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms