Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
USP39Q53GS9 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
USP39Q53GS9 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 AC103592.1-201ENST00000394513 664 ntBASIC14.05□□□□□ -0.16
USP39Q53GS9 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
USP39Q53GS9 HNRNPA1P58-201ENST00000403629 610 ntBASIC14.05□□□□□ -0.16
USP39Q53GS9 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC14.05□□□□□ -0.16
USP39Q53GS9 RPL3P5-201ENST00000441645 1232 ntBASIC14.05□□□□□ -0.16
USP39Q53GS9 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC14.05□□□□□ -0.16
USP39Q53GS9 RN7SL288P-201ENST00000490496 291 ntBASIC14.05□□□□□ -0.16
USP39Q53GS9 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC14.05□□□□□ -0.16
USP39Q53GS9 DLK1-205ENST00000556051 469 ntTSL 2 BASIC14.05□□□□□ -0.16
USP39Q53GS9 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC14.05□□□□□ -0.16
USP39Q53GS9 RN7SL455P-201ENST00000580629 282 ntBASIC14.05□□□□□ -0.16
USP39Q53GS9 NAV1-210ENST00000593583 726 ntBASIC14.05□□□□□ -0.16
USP39Q53GS9 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
USP39Q53GS9 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
USP39Q53GS9 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.05□□□□□ -0.16
USP39Q53GS9 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
USP39Q53GS9 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
USP39Q53GS9 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC14.05□□□□□ -0.16
USP39Q53GS9 FKBP4P8-201ENST00000610931 1369 ntBASIC14.05□□□□□ -0.16
USP39Q53GS9 AC130686.1-201ENST00000622936 2466 ntBASIC14.05□□□□□ -0.16
USP39Q53GS9 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
USP39Q53GS9 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
USP39Q53GS9 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC14.05□□□□□ -0.16
USP39Q53GS9 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
USP39Q53GS9 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
USP39Q53GS9 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.04□□□□□ -0.16
USP39Q53GS9 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
USP39Q53GS9 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.04□□□□□ -0.16
USP39Q53GS9 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC14.04□□□□□ -0.16
USP39Q53GS9 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC14.04□□□□□ -0.16
USP39Q53GS9 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC14.04□□□□□ -0.16
USP39Q53GS9 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC14.04□□□□□ -0.16
USP39Q53GS9 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
USP39Q53GS9 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC14.04□□□□□ -0.16
USP39Q53GS9 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
USP39Q53GS9 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 PTGER4P2-201ENST00000328411 252 ntBASIC14.04□□□□□ -0.16
USP39Q53GS9 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC14.04□□□□□ -0.16
USP39Q53GS9 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC14.04□□□□□ -0.16
USP39Q53GS9 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 AF274858.1-201ENST00000406288 372 ntBASIC14.04□□□□□ -0.16
USP39Q53GS9 ACTBP7-201ENST00000418351 1124 ntBASIC14.04□□□□□ -0.16
USP39Q53GS9 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC14.04□□□□□ -0.16
USP39Q53GS9 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC14.04□□□□□ -0.16
USP39Q53GS9 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
USP39Q53GS9 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC14.04□□□□□ -0.16
USP39Q53GS9 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC14.04□□□□□ -0.16
USP39Q53GS9 STK24P1-201ENST00000455035 1291 ntBASIC14.04□□□□□ -0.16
USP39Q53GS9 PTGER4P3-201ENST00000458150 252 ntBASIC14.04□□□□□ -0.16
USP39Q53GS9 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC14.04□□□□□ -0.16
USP39Q53GS9 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC14.04□□□□□ -0.16
USP39Q53GS9 AC025186.1-201ENST00000478174 870 ntBASIC14.04□□□□□ -0.16
USP39Q53GS9 RBM4-207ENST00000506523 654 ntTSL 3 BASIC14.04□□□□□ -0.16
USP39Q53GS9 AC092862.1-201ENST00000541534 533 ntBASIC14.04□□□□□ -0.16
USP39Q53GS9 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 DGAT2L7P-201ENST00000602462 744 ntBASIC14.04□□□□□ -0.16
USP39Q53GS9 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC14.04□□□□□ -0.16
USP39Q53GS9 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
USP39Q53GS9 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
USP39Q53GS9 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP39Q53GS9 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC14.03□□□□□ -0.16
USP39Q53GS9 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
USP39Q53GS9 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms