Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
LMO4P61968 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC11.19□□□□□ -0.62
LMO4P61968 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LMO4P61968 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
LMO4P61968 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
LMO4P61968 KCP-203ENST00000610776 5108 ntTSL 5 BASIC11.19□□□□□ -0.62
LMO4P61968 PROZ-201ENST00000342783 1551 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
LMO4P61968 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LMO4P61968 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LMO4P61968 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
LMO4P61968 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
LMO4P61968 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC11.19□□□□□ -0.62
LMO4P61968 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LMO4P61968 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
LMO4P61968 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC11.19□□□□□ -0.62
LMO4P61968 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
LMO4P61968 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
LMO4P61968 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LMO4P61968 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC11.19□□□□□ -0.62
LMO4P61968 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
LMO4P61968 STK16-202ENST00000409260 1493 ntTSL 5 BASIC11.19□□□□□ -0.62
LMO4P61968 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
LMO4P61968 AC023794.5-201ENST00000564380 2157 ntBASIC11.18□□□□□ -0.62
LMO4P61968 GFI1B-202ENST00000372122 1797 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 AC018904.2-201ENST00000561202 1757 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
LMO4P61968 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC11.18□□□□□ -0.62
LMO4P61968 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC11.18□□□□□ -0.62
LMO4P61968 AC011474.4-201ENST00000623523 2076 ntBASIC11.18□□□□□ -0.62
LMO4P61968 AL358781.1-202ENST00000321081 1360 ntBASIC11.18□□□□□ -0.62
LMO4P61968 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 LINC01744-201ENST00000457698 2042 ntTSL 2 BASIC11.18□□□□□ -0.62
LMO4P61968 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC11.18□□□□□ -0.62
LMO4P61968 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 ABCD1P2-201ENST00000429313 1601 ntBASIC11.18□□□□□ -0.62
LMO4P61968 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 PAEP-201ENST00000277508 821 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 HDGF-202ENST00000368206 960 ntTSL 5 BASIC11.18□□□□□ -0.62
LMO4P61968 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 AL357079.1-203ENST00000412378 494 ntTSL 5 BASIC11.18□□□□□ -0.62
LMO4P61968 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC11.18□□□□□ -0.62
LMO4P61968 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC11.18□□□□□ -0.62
LMO4P61968 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
LMO4P61968 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC11.18□□□□□ -0.62
LMO4P61968 CCND3P1-201ENST00000438347 580 ntBASIC11.18□□□□□ -0.62
LMO4P61968 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC11.18□□□□□ -0.62
LMO4P61968 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC11.18□□□□□ -0.62
LMO4P61968 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC11.18□□□□□ -0.62
LMO4P61968 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 OR4A49P-201ENST00000527050 632 ntBASIC11.18□□□□□ -0.62
LMO4P61968 AC004801.1-201ENST00000549557 360 ntBASIC11.18□□□□□ -0.62
LMO4P61968 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
LMO4P61968 TNFRSF10A-204ENST00000613472 978 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 AC048382.6-201ENST00000621980 1223 ntBASIC11.18□□□□□ -0.62
LMO4P61968 Z82244.1-201ENST00000631502 840 ntBASIC11.18□□□□□ -0.62
LMO4P61968 BX322534.1-201ENST00000635574 241 ntBASIC11.18□□□□□ -0.62
LMO4P61968 AC215524.1-201ENST00000635696 241 ntBASIC11.18□□□□□ -0.62
LMO4P61968 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC11.18□□□□□ -0.62
LMO4P61968 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 ECI2-207ENST00000465828 1548 ntTSL 5 BASIC11.18□□□□□ -0.62
LMO4P61968 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 AL009178.2-201ENST00000597278 2719 ntBASIC11.18□□□□□ -0.62
LMO4P61968 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC11.18□□□□□ -0.62
LMO4P61968 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 PPP2R2C-204ENST00000506140 1780 ntTSL 2 BASIC11.18□□□□□ -0.62
LMO4P61968 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
LMO4P61968 FAM226B-201ENST00000602508 1490 ntBASIC11.18□□□□□ -0.62
LMO4P61968 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC11.18□□□□□ -0.62
LMO4P61968 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LMO4P61968 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
LMO4P61968 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC11.18□□□□□ -0.62
LMO4P61968 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC11.18□□□□□ -0.62
LMO4P61968 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
LMO4P61968 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 FAM86C1-202ENST00000359244 2110 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
LMO4P61968 LINC01114-202ENST00000424321 2112 ntTSL 2 BASIC11.17□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms