Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 POLL-206ENST00000370172 2308 ntTSL 2 BASIC12.45□□□□□ -0.42
SUMO3P55854 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SUMO3P55854 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SUMO3P55854 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC12.45□□□□□ -0.42
SUMO3P55854 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC12.45□□□□□ -0.42
SUMO3P55854 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
SUMO3P55854 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SUMO3P55854 RTN3-210ENST00000540798 3124 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SUMO3P55854 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SUMO3P55854 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
SUMO3P55854 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC12.45□□□□□ -0.42
SUMO3P55854 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC12.45□□□□□ -0.42
SUMO3P55854 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC12.45□□□□□ -0.42
SUMO3P55854 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SUMO3P55854 AC091046.1-201ENST00000331871 207 ntBASIC12.45□□□□□ -0.42
SUMO3P55854 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SUMO3P55854 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC12.45□□□□□ -0.42
SUMO3P55854 C20orf141-201ENST00000380589 730 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SUMO3P55854 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SUMO3P55854 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC12.45□□□□□ -0.42
SUMO3P55854 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
SUMO3P55854 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC12.45□□□□□ -0.42
SUMO3P55854 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC12.45□□□□□ -0.42
SUMO3P55854 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC12.45□□□□□ -0.42
SUMO3P55854 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC12.45□□□□□ -0.42
SUMO3P55854 AC006529.1-201ENST00000459978 637 ntBASIC12.45□□□□□ -0.42
SUMO3P55854 RNA5SP406-201ENST00000516106 112 ntBASIC12.45□□□□□ -0.42
SUMO3P55854 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC12.45□□□□□ -0.42
SUMO3P55854 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC12.45□□□□□ -0.42
SUMO3P55854 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC12.45□□□□□ -0.42
SUMO3P55854 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC12.45□□□□□ -0.42
SUMO3P55854 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC12.45□□□□□ -0.42
SUMO3P55854 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC12.45□□□□□ -0.42
SUMO3P55854 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC12.45□□□□□ -0.42
SUMO3P55854 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC12.45□□□□□ -0.42
SUMO3P55854 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC12.45□□□□□ -0.42
SUMO3P55854 SNX12-206ENST00000622259 661 ntTSL 5 BASIC12.45□□□□□ -0.42
SUMO3P55854 ADRA1A-210ENST00000519229 1838 ntTSL 5 BASIC12.45□□□□□ -0.42
SUMO3P55854 AC002350.2-201ENST00000623894 1828 ntBASIC12.45□□□□□ -0.42
SUMO3P55854 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
SUMO3P55854 MBOAT4-201ENST00000320542 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SUMO3P55854 MCF2L-209ENST00000397036 1544 ntTSL 2 BASIC12.45□□□□□ -0.42
SUMO3P55854 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
SUMO3P55854 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC12.45□□□□□ -0.42
SUMO3P55854 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
SUMO3P55854 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
SUMO3P55854 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SUMO3P55854 CDCA3-202ENST00000422785 2760 ntTSL 2 BASIC12.45□□□□□ -0.42
SUMO3P55854 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SUMO3P55854 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
SUMO3P55854 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SUMO3P55854 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 UBTF-209ENST00000529383 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 PI4KAP2-201ENST00000360806 2080 ntBASIC12.44□□□□□ -0.42
SUMO3P55854 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC12.44□□□□□ -0.42
SUMO3P55854 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 OR8J1-202ENST00000533152 1320 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
SUMO3P55854 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC12.44□□□□□ -0.42
SUMO3P55854 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
SUMO3P55854 SLC7A9-201ENST00000023064 1761 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 SLC45A2-201ENST00000296589 1772 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 GPN1-211ENST00000610189 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 ARHGAP21-217ENST00000612832 5514 ntTSL 5 BASIC12.44□□□□□ -0.42
SUMO3P55854 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC12.44□□□□□ -0.42
SUMO3P55854 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC12.44□□□□□ -0.42
SUMO3P55854 OR7E115P-201ENST00000382617 1024 ntBASIC12.44□□□□□ -0.42
SUMO3P55854 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 HIST2H2BA-201ENST00000412169 381 ntBASIC12.44□□□□□ -0.42
SUMO3P55854 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC12.44□□□□□ -0.42
SUMO3P55854 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 ESRRAP2-203ENST00000453309 822 ntTSL 5 BASIC12.44□□□□□ -0.42
SUMO3P55854 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC12.44□□□□□ -0.42
SUMO3P55854 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC12.44□□□□□ -0.42
SUMO3P55854 EEF1GP8-201ENST00000506566 1154 ntBASIC12.44□□□□□ -0.42
SUMO3P55854 LY6E-208ENST00000520531 490 ntTSL 2 BASIC12.44□□□□□ -0.42
SUMO3P55854 CD44-224ENST00000526669 870 ntTSL 5 BASIC12.44□□□□□ -0.42
SUMO3P55854 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 MIR3180-2-201ENST00000581748 88 ntBASIC12.44□□□□□ -0.42
SUMO3P55854 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC12.44□□□□□ -0.42
SUMO3P55854 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC12.44□□□□□ -0.42
SUMO3P55854 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC12.44□□□□□ -0.42
SUMO3P55854 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
SUMO3P55854 AC005618.3-201ENST00000624928 458 ntBASIC12.44□□□□□ -0.42
SUMO3P55854 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC12.44□□□□□ -0.42
SUMO3P55854 Z82244.1-201ENST00000631502 840 ntBASIC12.44□□□□□ -0.42
SUMO3P55854 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
SUMO3P55854 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
SUMO3P55854 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC12.44□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms