Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC14.53□□□□□ -0.08
BDNFP23560 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
BDNFP23560 CES1P2-201ENST00000566467 1242 ntBASIC14.53□□□□□ -0.08
BDNFP23560 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC14.53□□□□□ -0.08
BDNFP23560 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC14.53□□□□□ -0.08
BDNFP23560 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 AL451007.2-201ENST00000632004 563 ntBASIC14.53□□□□□ -0.08
BDNFP23560 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC14.53□□□□□ -0.08
BDNFP23560 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
BDNFP23560 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC14.53□□□□□ -0.08
BDNFP23560 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC14.53□□□□□ -0.08
BDNFP23560 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC14.53□□□□□ -0.08
BDNFP23560 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 AC020917.4-201ENST00000623994 1999 ntBASIC14.53□□□□□ -0.08
BDNFP23560 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
BDNFP23560 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
BDNFP23560 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
BDNFP23560 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC14.52□□□□□ -0.08
BDNFP23560 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
BDNFP23560 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
BDNFP23560 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
BDNFP23560 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
BDNFP23560 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
BDNFP23560 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
BDNFP23560 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC14.52□□□□□ -0.08
BDNFP23560 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
BDNFP23560 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC14.52□□□□□ -0.08
BDNFP23560 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
BDNFP23560 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
BDNFP23560 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC14.52□□□□□ -0.09
BDNFP23560 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
BDNFP23560 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
BDNFP23560 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
BDNFP23560 CROT-203ENST00000419147 2959 ntTSL 2 BASIC14.52□□□□□ -0.09
BDNFP23560 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC14.52□□□□□ -0.09
BDNFP23560 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC14.52□□□□□ -0.09
BDNFP23560 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC14.52□□□□□ -0.09
BDNFP23560 KRT18P37-201ENST00000520711 1282 ntBASIC14.52□□□□□ -0.09
BDNFP23560 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
BDNFP23560 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC14.52□□□□□ -0.09
BDNFP23560 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC14.52□□□□□ -0.09
BDNFP23560 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC14.52□□□□□ -0.09
BDNFP23560 DLK1-205ENST00000556051 469 ntTSL 2 BASIC14.52□□□□□ -0.09
BDNFP23560 JPT2-214ENST00000569765 782 ntTSL 2 BASIC14.52□□□□□ -0.09
BDNFP23560 MIR4472-1-201ENST00000584349 80 ntBASIC14.52□□□□□ -0.09
BDNFP23560 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
BDNFP23560 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC14.52□□□□□ -0.09
BDNFP23560 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
BDNFP23560 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
BDNFP23560 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
BDNFP23560 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
BDNFP23560 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
BDNFP23560 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
BDNFP23560 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
BDNFP23560 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
BDNFP23560 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
BDNFP23560 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
BDNFP23560 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
BDNFP23560 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
BDNFP23560 MEX3B-202ENST00000558133 4333 ntBASIC14.52□□□□□ -0.09
BDNFP23560 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
BDNFP23560 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
BDNFP23560 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
BDNFP23560 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
BDNFP23560 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
BDNFP23560 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
BDNFP23560 CSF3-204ENST00000394149 1583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
BDNFP23560 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC14.51□□□□□ -0.09
BDNFP23560 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
BDNFP23560 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
BDNFP23560 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
BDNFP23560 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
BDNFP23560 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
BDNFP23560 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
BDNFP23560 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
BDNFP23560 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC14.51□□□□□ -0.09
BDNFP23560 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
BDNFP23560 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC14.51□□□□□ -0.09
BDNFP23560 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
BDNFP23560 DENND3-221ENST00000523308 2959 ntTSL 2 BASIC14.51□□□□□ -0.09
BDNFP23560 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.51□□□□□ -0.09
BDNFP23560 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
BDNFP23560 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
BDNFP23560 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.51□□□□□ -0.09
BDNFP23560 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms