Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
USP39Q53GS9 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
USP39Q53GS9 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
USP39Q53GS9 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
USP39Q53GS9 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
USP39Q53GS9 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
USP39Q53GS9 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC14.07□□□□□ -0.16
USP39Q53GS9 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
USP39Q53GS9 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.07□□□□□ -0.16
USP39Q53GS9 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
USP39Q53GS9 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC14.07□□□□□ -0.16
USP39Q53GS9 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
USP39Q53GS9 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
USP39Q53GS9 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC14.07□□□□□ -0.16
USP39Q53GS9 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
USP39Q53GS9 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC14.06□□□□□ -0.16
USP39Q53GS9 AMT-256ENST00000638063 1783 ntTSL 5 BASIC14.06□□□□□ -0.16
USP39Q53GS9 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC14.06□□□□□ -0.16
USP39Q53GS9 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.06□□□□□ -0.16
USP39Q53GS9 AL365181.1-201ENST00000564032 1828 ntBASIC14.06□□□□□ -0.16
USP39Q53GS9 DDC-213ENST00000617822 1809 ntTSL 3 BASIC14.06□□□□□ -0.16
USP39Q53GS9 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 TBC1D27-202ENST00000424239 1573 ntBASIC14.06□□□□□ -0.16
USP39Q53GS9 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
USP39Q53GS9 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
USP39Q53GS9 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC14.06□□□□□ -0.16
USP39Q53GS9 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC14.06□□□□□ -0.16
USP39Q53GS9 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC14.06□□□□□ -0.16
USP39Q53GS9 PSAT1P2-201ENST00000426107 972 ntBASIC14.06□□□□□ -0.16
USP39Q53GS9 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC14.06□□□□□ -0.16
USP39Q53GS9 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC14.06□□□□□ -0.16
USP39Q53GS9 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC14.06□□□□□ -0.16
USP39Q53GS9 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC14.06□□□□□ -0.16
USP39Q53GS9 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC14.06□□□□□ -0.16
USP39Q53GS9 GOLGA2P8-201ENST00000505201 779 ntBASIC14.06□□□□□ -0.16
USP39Q53GS9 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
USP39Q53GS9 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC14.06□□□□□ -0.16
USP39Q53GS9 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC14.06□□□□□ -0.16
USP39Q53GS9 AP000769.1-203ENST00000637245 208 ntBASIC14.06□□□□□ -0.16
USP39Q53GS9 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.06□□□□□ -0.16
USP39Q53GS9 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14.06□□□□□ -0.16
USP39Q53GS9 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC14.06□□□□□ -0.16
USP39Q53GS9 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 AC131212.3-201ENST00000624087 4219 ntBASIC14.06□□□□□ -0.16
USP39Q53GS9 AC138761.6-201ENST00000583997 1423 ntBASIC14.06□□□□□ -0.16
USP39Q53GS9 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
USP39Q53GS9 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP39Q53GS9 AC004554.1-201ENST00000422830 1468 ntBASIC14.06□□□□□ -0.16
USP39Q53GS9 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
USP39Q53GS9 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.05□□□□□ -0.16
USP39Q53GS9 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14.05□□□□□ -0.16
USP39Q53GS9 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
USP39Q53GS9 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
USP39Q53GS9 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
USP39Q53GS9 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms