Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCNAP12004 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCNAP12004 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
PCNAP12004 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCNAP12004 PCDHGA5-201ENST00000518069 4602 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCNAP12004 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCNAP12004 FRMPD2B-201ENST00000431305 1347 ntBASIC13.57□□□□□ -0.24
PCNAP12004 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC13.57□□□□□ -0.24
PCNAP12004 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCNAP12004 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
PCNAP12004 ANKRD36B-204ENST00000438709 6067 ntTSL 5 BASIC13.57□□□□□ -0.24
PCNAP12004 CACNA1C-214ENST00000399634 7590 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
PCNAP12004 CACNA1C-222ENST00000406454 7590 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
PCNAP12004 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
PCNAP12004 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC13.57□□□□□ -0.24
PCNAP12004 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC13.57□□□□□ -0.24
PCNAP12004 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
PCNAP12004 DFFA-202ENST00000377038 6032 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC13.56□□□□□ -0.24
PCNAP12004 AL645937.6-201ENST00000641122 3727 ntBASIC13.56□□□□□ -0.24
PCNAP12004 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
PCNAP12004 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC13.56□□□□□ -0.24
PCNAP12004 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 GNAL-203ENST00000423027 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
PCNAP12004 ICOSLG-203ENST00000400379 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 AC015909.3-201ENST00000572855 1794 ntBASIC13.56□□□□□ -0.24
PCNAP12004 NUMA1-233ENST00000616538 6998 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
PCNAP12004 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC13.56□□□□□ -0.24
PCNAP12004 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
PCNAP12004 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 AL391647.1-201ENST00000395664 511 ntBASIC13.56□□□□□ -0.24
PCNAP12004 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 AC006987.1-201ENST00000413610 527 ntBASIC13.56□□□□□ -0.24
PCNAP12004 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC13.56□□□□□ -0.24
PCNAP12004 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC13.56□□□□□ -0.24
PCNAP12004 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC13.56□□□□□ -0.24
PCNAP12004 AC092658.1-201ENST00000505836 891 ntBASIC13.56□□□□□ -0.24
PCNAP12004 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
PCNAP12004 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC13.56□□□□□ -0.24
PCNAP12004 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC13.56□□□□□ -0.24
PCNAP12004 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC13.56□□□□□ -0.24
PCNAP12004 AC020914.3-201ENST00000594712 304 ntBASIC13.56□□□□□ -0.24
PCNAP12004 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC13.56□□□□□ -0.24
PCNAP12004 AC091544.8-201ENST00000619490 361 ntBASIC13.56□□□□□ -0.24
PCNAP12004 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
PCNAP12004 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC13.56□□□□□ -0.24
PCNAP12004 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC13.56□□□□□ -0.24
PCNAP12004 AC008620.2-201ENST00000510294 1569 ntBASIC13.56□□□□□ -0.24
PCNAP12004 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC13.56□□□□□ -0.24
PCNAP12004 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC13.56□□□□□ -0.24
PCNAP12004 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC13.56□□□□□ -0.24
PCNAP12004 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 PPP1R26P2-201ENST00000611403 3595 ntBASIC13.56□□□□□ -0.24
PCNAP12004 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC13.56□□□□□ -0.24
PCNAP12004 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCNAP12004 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
PCNAP12004 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCNAP12004 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCNAP12004 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCNAP12004 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
PCNAP12004 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
PCNAP12004 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
PCNAP12004 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC13.55□□□□□ -0.24
PCNAP12004 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
PCNAP12004 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
PCNAP12004 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
PCNAP12004 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
PCNAP12004 AC102953.2-201ENST00000609755 3026 ntBASIC13.55□□□□□ -0.24
PCNAP12004 ARHGAP21-217ENST00000612832 5514 ntTSL 5 BASIC13.55□□□□□ -0.24
PCNAP12004 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
PCNAP12004 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC13.55□□□□□ -0.24
PCNAP12004 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCNAP12004 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCNAP12004 PIAS2-201ENST00000324794 4543 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
PCNAP12004 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
PCNAP12004 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCNAP12004 AGER-203ENST00000375065 665 ntTSL 2 BASIC13.55□□□□□ -0.24
PCNAP12004 BAX-205ENST00000391871 687 ntTSL 5 BASIC13.55□□□□□ -0.24
PCNAP12004 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
PCNAP12004 AC091804.1-201ENST00000486888 567 ntBASIC13.55□□□□□ -0.24
PCNAP12004 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC13.55□□□□□ -0.24
PCNAP12004 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms