Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 PER1-202ENST00000354903 3115 ntTSL 2 BASIC12.26□□□□□ -0.45
SOX2P48431 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
SOX2P48431 SPG11-203ENST00000535302 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
SOX2P48431 CYB5RL-201ENST00000287899 5777 ntTSL 3 BASIC12.26□□□□□ -0.45
SOX2P48431 RTL10-201ENST00000328554 6619 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
SOX2P48431 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
SOX2P48431 AC093462.1-201ENST00000621167 1683 ntBASIC12.26□□□□□ -0.45
SOX2P48431 RBMS1-201ENST00000348849 4273 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 BAIAP2L1-201ENST00000005260 3622 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC12.25□□□□□ -0.45
SOX2P48431 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 CCDC178-201ENST00000300227 3087 ntAPPRIS P3 TSL 2 BASIC12.25□□□□□ -0.45
SOX2P48431 ARHGAP45-210ENST00000590214 4191 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
SOX2P48431 BAIAP2-AS1-202ENST00000577066 4465 ntTSL 2 BASIC12.25□□□□□ -0.45
SOX2P48431 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC12.25□□□□□ -0.45
SOX2P48431 DNMT3B-206ENST00000456297 2315 ntTSL 2 BASIC12.25□□□□□ -0.45
SOX2P48431 CACNA1F-202ENST00000376251 5813 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 PTPRN2-203ENST00000389418 4706 ntAPPRIS P4 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 AC022364.1-202ENST00000617468 2409 ntBASIC12.25□□□□□ -0.45
SOX2P48431 MPP2-219ENST00000612133 4938 ntTSL 5 BASIC12.25□□□□□ -0.45
SOX2P48431 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC12.25□□□□□ -0.45
SOX2P48431 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
SOX2P48431 AL512384.1-201ENST00000406683 331 ntBASIC12.25□□□□□ -0.45
SOX2P48431 KRT18P36-201ENST00000411618 1276 ntBASIC12.25□□□□□ -0.45
SOX2P48431 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC12.25□□□□□ -0.45
SOX2P48431 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC12.25□□□□□ -0.45
SOX2P48431 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
SOX2P48431 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC12.25□□□□□ -0.45
SOX2P48431 HNRNPA1P36-201ENST00000521313 955 ntBASIC12.25□□□□□ -0.45
SOX2P48431 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC12.25□□□□□ -0.45
SOX2P48431 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC12.25□□□□□ -0.45
SOX2P48431 HNRNPA1P48-202ENST00000565308 961 ntBASIC12.25□□□□□ -0.45
SOX2P48431 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC12.25□□□□□ -0.45
SOX2P48431 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC12.25□□□□□ -0.45
SOX2P48431 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC12.25□□□□□ -0.45
SOX2P48431 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC12.25□□□□□ -0.45
SOX2P48431 AC092299.1-201ENST00000632679 757 ntBASIC12.25□□□□□ -0.45
SOX2P48431 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC12.25□□□□□ -0.45
SOX2P48431 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 BCAS4-202ENST00000371608 6680 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC12.25□□□□□ -0.45
SOX2P48431 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 ARHGAP35-206ENST00000614079 7696 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 MYO1C-202ENST00000361007 4734 ntAPPRIS P3 TSL 5 BASIC12.25□□□□□ -0.45
SOX2P48431 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC12.25□□□□□ -0.45
SOX2P48431 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC12.25□□□□□ -0.45
SOX2P48431 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 MAN2B2-201ENST00000285599 5143 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 AL023775.1-201ENST00000454907 1746 ntBASIC12.25□□□□□ -0.45
SOX2P48431 AC018629.1-201ENST00000623381 1736 ntBASIC12.25□□□□□ -0.45
SOX2P48431 Z98885.3-201ENST00000624882 1757 ntBASIC12.25□□□□□ -0.45
SOX2P48431 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 MYT1-201ENST00000328439 5535 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 KCNJ10-201ENST00000368089 5528 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 DNAJC3-202ENST00000602402 5591 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 ZNF239-205ENST00000535642 1904 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
SOX2P48431 RPS6KC1-209ENST00000615329 4022 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 AC016582.3-202ENST00000443870 6580 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 LAS1L-202ENST00000374807 2386 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
SOX2P48431 ICE1-201ENST00000296564 7927 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 SLC4A7-203ENST00000425128 7970 ntTSL 5 BASIC12.24□□□□□ -0.45
SOX2P48431 AHI1-205ENST00000457866 5549 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC12.24□□□□□ -0.45
SOX2P48431 SPECC1-206ENST00000395530 8133 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 ZHX2-201ENST00000314393 4624 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 ARID4A-206ENST00000431317 5783 ntTSL 5 BASIC12.24□□□□□ -0.45
SOX2P48431 SNX33-201ENST00000308527 8008 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 DAO-201ENST00000228476 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC12.24□□□□□ -0.45
SOX2P48431 INPP5J-201ENST00000331075 3347 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
SOX2P48431 SDC3-201ENST00000336798 6392 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 LBX2-201ENST00000341396 886 ntTSL 3 BASIC12.24□□□□□ -0.45
SOX2P48431 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC12.24□□□□□ -0.45
SOX2P48431 SCNN1B-202ENST00000343070 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 SLC37A4-202ENST00000357590 2356 ntTSL 5 BASIC12.24□□□□□ -0.45
SOX2P48431 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC12.24□□□□□ -0.45
SOX2P48431 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
SOX2P48431 ZNF646-202ENST00000394979 8118 ntAPPRIS ALT2 BASIC12.24□□□□□ -0.45
SOX2P48431 TISP43-201ENST00000409793 538 ntTSL 4 BASIC12.24□□□□□ -0.45
SOX2P48431 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC12.24□□□□□ -0.45
SOX2P48431 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC12.24□□□□□ -0.45
SOX2P48431 KRT43P-201ENST00000434019 910 ntBASIC12.24□□□□□ -0.45
SOX2P48431 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC12.24□□□□□ -0.45
SOX2P48431 KRT17P7-201ENST00000451704 1104 ntBASIC12.24□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms