Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LINC00677-201ENST00000558224 486 ntTSL 3 BASIC13.68□□□□□ -0.22
COL6A3P12111 RN7SL644P-201ENST00000577919 259 ntBASIC13.68□□□□□ -0.22
COL6A3P12111 TCF4-AS1-201ENST00000587660 396 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A3P12111 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
COL6A3P12111 DNAJB8-202ENST00000469083 3365 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
COL6A3P12111 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 PI4KAP2-201ENST00000360806 2080 ntBASIC13.68□□□□□ -0.22
COL6A3P12111 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
COL6A3P12111 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A3P12111 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 AC027612.1-201ENST00000445234 2395 ntBASIC13.68□□□□□ -0.22
COL6A3P12111 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 LINC00910-201ENST00000341011 2303 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 ZNF589-202ENST00000412564 593 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 AC118553.1-201ENST00000454219 655 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A3P12111 LINC01324-202ENST00000497379 838 ntTSL 5 BASIC13.68□□□□□ -0.22
COL6A3P12111 AC008588.1-201ENST00000514867 462 ntTSL 3 BASIC13.68□□□□□ -0.22
COL6A3P12111 TMEM147-AS1-204ENST00000590125 698 ntTSL 3 BASIC13.68□□□□□ -0.22
COL6A3P12111 MIR6776-201ENST00000616678 59 ntBASIC13.68□□□□□ -0.22
COL6A3P12111 AC105917.1-201ENST00000506637 2539 ntBASIC13.68□□□□□ -0.22
COL6A3P12111 CYP2T1P-202ENST00000641596 2535 ntBASIC13.68□□□□□ -0.22
COL6A3P12111 RCBTB2-206ENST00000544904 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A3P12111 MAGEA9B-203ENST00000595065 1807 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
COL6A3P12111 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A3P12111 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A3P12111 AC142391.1-201ENST00000515823 1002 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
COL6A3P12111 IGHVII-33-1-201ENST00000524010 280 ntBASIC13.67□□□□□ -0.22
COL6A3P12111 AC005154.1-223ENST00000584372 547 ntTSL 5 BASIC13.67□□□□□ -0.22
COL6A3P12111 DMRTC1-201ENST00000595412 1190 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A3P12111 AC067969.1-201ENST00000595853 552 ntTSL 5 BASIC13.67□□□□□ -0.22
COL6A3P12111 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC13.67□□□□□ -0.22
COL6A3P12111 CHI3L2-202ENST00000369748 1468 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A3P12111 DCAF13-201ENST00000297579 2642 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A3P12111 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
COL6A3P12111 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A3P12111 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC13.67□□□□□ -0.22
COL6A3P12111 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A3P12111 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC13.67□□□□□ -0.22
COL6A3P12111 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
COL6A3P12111 MYB-201ENST00000316528 3571 ntTSL 5 BASIC13.67□□□□□ -0.22
COL6A3P12111 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A3P12111 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.67□□□□□ -0.22
COL6A3P12111 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A3P12111 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A3P12111 PRKCE-202ENST00000394874 996 ntTSL 3 BASIC13.67□□□□□ -0.22
COL6A3P12111 SNAPC5-203ENST00000395589 749 ntAPPRIS P2 TSL 2 BASIC13.67□□□□□ -0.22
COL6A3P12111 AK4P5-201ENST00000404520 634 ntBASIC13.67□□□□□ -0.22
COL6A3P12111 GAGE10-201ENST00000407599 538 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
COL6A3P12111 LIMS2-203ENST00000409254 867 ntTSL 3 BASIC13.67□□□□□ -0.22
COL6A3P12111 AC104623.1-201ENST00000446357 546 ntTSL 4 BASIC13.67□□□□□ -0.22
COL6A3P12111 TIMM23B-202ENST00000451577 1152 ntTSL 2 BASIC13.67□□□□□ -0.22
COL6A3P12111 AC099541.1-201ENST00000453828 670 ntTSL 2 BASIC13.67□□□□□ -0.22
COL6A3P12111 AC026401.3-201ENST00000624682 882 ntBASIC13.67□□□□□ -0.22
COL6A3P12111 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A3P12111 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A3P12111 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC13.67□□□□□ -0.22
COL6A3P12111 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
COL6A3P12111 IST1-221ENST00000544564 1500 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
COL6A3P12111 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A3P12111 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A3P12111 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC13.67□□□□□ -0.22
COL6A3P12111 LY6D-201ENST00000301263 804 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A3P12111 CST13P-203ENST00000413633 1152 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A3P12111 AC074085.2-201ENST00000416734 428 ntBASIC13.67□□□□□ -0.22
COL6A3P12111 NDUFA13-204ENST00000507754 991 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A3P12111 AC138956.2-201ENST00000512934 528 ntTSL 5 BASIC13.67□□□□□ -0.22
COL6A3P12111 AC092435.2-201ENST00000515530 524 ntTSL 4 BASIC13.67□□□□□ -0.22
COL6A3P12111 AC011092.1-201ENST00000533128 1047 ntBASIC13.67□□□□□ -0.22
COL6A3P12111 RBM17P4-201ENST00000558517 1192 ntBASIC13.67□□□□□ -0.22
COL6A3P12111 LYPD8-202ENST00000590317 1142 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A3P12111 AL121658.1-201ENST00000608489 712 ntBASIC13.67□□□□□ -0.22
COL6A3P12111 AL139424.3-202ENST00000641619 917 ntBASIC13.67□□□□□ -0.22
COL6A3P12111 AC073347.1-201ENST00000421633 2643 ntBASIC13.67□□□□□ -0.22
COL6A3P12111 ZNF397-209ENST00000591206 1516 ntTSL 2 BASIC13.66□□□□□ -0.22
COL6A3P12111 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC13.66□□□□□ -0.22
COL6A3P12111 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A3P12111 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A3P12111 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
COL6A3P12111 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
COL6A3P12111 AC139749.1-202ENST00000617529 3139 ntBASIC13.66□□□□□ -0.22
COL6A3P12111 MBP-202ENST00000355994 2772 ntTSL 5 BASIC13.66□□□□□ -0.22
COL6A3P12111 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A3P12111 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A3P12111 MCEE-201ENST00000244217 835 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A3P12111 GNRH2-203ENST00000380346 353 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
COL6A3P12111 RPL15P3-201ENST00000391491 615 ntBASIC13.66□□□□□ -0.22
COL6A3P12111 AC140481.1-202ENST00000436488 525 ntTSL 2 BASIC13.66□□□□□ -0.22
COL6A3P12111 VDAC1P12-201ENST00000451853 882 ntBASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms