Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
FREM3P0C091 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC12.56□□□□□ -0.4
FREM3P0C091 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
FREM3P0C091 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
FREM3P0C091 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC12.56□□□□□ -0.4
FREM3P0C091 AC004241.5-201ENST00000623870 2448 ntBASIC12.56□□□□□ -0.4
FREM3P0C091 TSN-212ENST00000536142 3328 ntTSL 2 BASIC12.56□□□□□ -0.4
FREM3P0C091 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FREM3P0C091 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC12.56□□□□□ -0.4
FREM3P0C091 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC12.55□□□□□ -0.4
FREM3P0C091 DDC-204ENST00000426377 1700 ntTSL 3 BASIC12.55□□□□□ -0.4
FREM3P0C091 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC12.55□□□□□ -0.4
FREM3P0C091 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC12.55□□□□□ -0.4
FREM3P0C091 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
FREM3P0C091 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC12.55□□□□□ -0.4
FREM3P0C091 AC018463.1-201ENST00000456674 917 ntBASIC12.55□□□□□ -0.4
FREM3P0C091 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
FREM3P0C091 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 C2orf69P1-201ENST00000563532 1093 ntBASIC12.55□□□□□ -0.4
FREM3P0C091 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC12.55□□□□□ -0.4
FREM3P0C091 MIR4472-1-201ENST00000584349 80 ntBASIC12.55□□□□□ -0.4
FREM3P0C091 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC12.55□□□□□ -0.4
FREM3P0C091 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
FREM3P0C091 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC12.55□□□□□ -0.4
FREM3P0C091 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC12.55□□□□□ -0.4
FREM3P0C091 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
FREM3P0C091 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
FREM3P0C091 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
FREM3P0C091 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC12.55□□□□□ -0.4
FREM3P0C091 ODCP-201ENST00000459650 1639 ntBASIC12.55□□□□□ -0.4
FREM3P0C091 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC12.55□□□□□ -0.4
FREM3P0C091 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC12.55□□□□□ -0.4
FREM3P0C091 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
FREM3P0C091 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
FREM3P0C091 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC12.55□□□□□ -0.4
FREM3P0C091 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC12.55□□□□□ -0.4
FREM3P0C091 Z69890.1-201ENST00000382990 339 ntBASIC12.55□□□□□ -0.4
FREM3P0C091 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 STK16-203ENST00000409516 895 ntTSL 2 BASIC12.55□□□□□ -0.4
FREM3P0C091 AC073210.1-201ENST00000414799 232 ntBASIC12.55□□□□□ -0.4
FREM3P0C091 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
FREM3P0C091 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC12.55□□□□□ -0.4
FREM3P0C091 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC12.55□□□□□ -0.4
FREM3P0C091 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC12.55□□□□□ -0.4
FREM3P0C091 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC12.55□□□□□ -0.4
FREM3P0C091 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC12.55□□□□□ -0.4
FREM3P0C091 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FREM3P0C091 MT3-202ENST00000561640 514 ntTSL 3 BASIC12.55□□□□□ -0.4
FREM3P0C091 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
FREM3P0C091 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC12.55□□□□□ -0.4
FREM3P0C091 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC12.55□□□□□ -0.4
FREM3P0C091 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC12.55□□□□□ -0.4
FREM3P0C091 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC12.54□□□□□ -0.4
FREM3P0C091 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FREM3P0C091 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FREM3P0C091 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
FREM3P0C091 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
FREM3P0C091 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC12.54□□□□□ -0.4
FREM3P0C091 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FREM3P0C091 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
FREM3P0C091 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FREM3P0C091 MARK2P9-201ENST00000430958 1727 ntBASIC12.54□□□□□ -0.4
FREM3P0C091 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
FREM3P0C091 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
FREM3P0C091 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FREM3P0C091 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FREM3P0C091 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
FREM3P0C091 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
FREM3P0C091 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC12.54□□□□□ -0.4
FREM3P0C091 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC12.54□□□□□ -0.4
FREM3P0C091 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FREM3P0C091 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms