Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DOAP06340 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DOAP06340 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DOAP06340 AC023908.3-201ENST00000564211 3047 ntBASIC16.18■□□□□ 0.18
HLA-DOAP06340 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 PTGER4P2-201ENST00000328411 252 ntBASIC16.18■□□□□ 0.18
HLA-DOAP06340 SIRPB3P-201ENST00000340424 1216 ntBASIC16.18■□□□□ 0.18
HLA-DOAP06340 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DOAP06340 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 AL080243.1-201ENST00000423293 1060 ntBASIC16.18■□□□□ 0.18
HLA-DOAP06340 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 PTGER4P3-201ENST00000458150 252 ntBASIC16.18■□□□□ 0.18
HLA-DOAP06340 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 SAA2-206ENST00000530400 323 ntTSL 3 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 RNF146-211ENST00000609447 607 ntTSL 4 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 AC113385.2-201ENST00000614465 762 ntBASIC16.18■□□□□ 0.18
HLA-DOAP06340 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DOAP06340 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DOAP06340 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DOAP06340 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DOAP06340 AL513497.1-201ENST00000624273 2083 ntBASIC16.18■□□□□ 0.18
HLA-DOAP06340 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DOAP06340 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DOAP06340 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DOAP06340 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DOAP06340 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
HLA-DOAP06340 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DOAP06340 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DOAP06340 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DOAP06340 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 ZCCHC8-207ENST00000543897 5663 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DOAP06340 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DOAP06340 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DOAP06340 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DOAP06340 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DOAP06340 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DOAP06340 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DOAP06340 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DOAP06340 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 AC083801.1-201ENST00000491689 358 ntBASIC16.17■□□□□ 0.18
HLA-DOAP06340 CISD2-202ENST00000503643 808 ntTSL 2 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DOAP06340 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC16.17■□□□□ 0.18
HLA-DOAP06340 AC139713.2-207ENST00000641556 1292 ntBASIC16.17■□□□□ 0.18
HLA-DOAP06340 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DOAP06340 DDC-212ENST00000615193 1674 ntTSL 3 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DOAP06340 AC138969.2-201ENST00000532739 9932 ntBASIC16.17■□□□□ 0.18
HLA-DOAP06340 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DOAP06340 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DOAP06340 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
HLA-DOAP06340 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DOAP06340 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DOAP06340 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DOAP06340 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DOAP06340 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DOAP06340 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DOAP06340 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DOAP06340 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DOAP06340 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DOAP06340 RET-205ENST00000615310 4337 ntTSL 5 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DOAP06340 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DOAP06340 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DOAP06340 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DOAP06340 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms