Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 DEGS1-202ENST00000391877 1345 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 PRDX2-202ENST00000334482 784 ntTSL 3 BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 AC105443.1-201ENST00000433754 712 ntBASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 JPT1-205ENST00000470924 663 ntTSL 5 BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 AC005920.4-201ENST00000573301 492 ntTSL 4 BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 PINX1-201ENST00000314787 1545 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 AC015813.5-201ENST00000624641 1514 ntBASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 ATF4P4-201ENST00000393544 1930 ntBASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 SLC36A1-211ENST00000616007 1389 ntTSL 2 BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 PLA2G2A-201ENST00000375111 970 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 MIR766-201ENST00000390223 111 ntBASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 SNORD23-201ENST00000408876 110 ntBASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 SLC22A18AS-202ENST00000526203 664 ntAPPRIS P2 TSL 3 BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 IL32-230ENST00000551122 733 ntAPPRIS ALT2 TSL 3 BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 AC009119.3-202ENST00000566773 196 ntTSL 3 BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 PAX6-238ENST00000638755 1161 ntTSL 5 BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC16.44■□□□□ 0.22
CCDC88AQ3V6T2 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 CNGB1-202ENST00000311183 1633 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 AC023509.3-202ENST00000591834 1609 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 LINC00337-201ENST00000429480 1302 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 AC041040.2-201ENST00000622926 2899 ntBASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 IGHE-202ENST00000641420 1485 ntAPPRIS P5 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 CD8B-202ENST00000349455 849 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 MED27-202ENST00000357028 1281 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 VGLL1-201ENST00000370634 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 HNRNPABP1-201ENST00000406003 734 ntBASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 HTATIP2-203ENST00000443524 967 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 HAX1-204ENST00000457918 914 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 ROPN1L-AS1-201ENST00000513037 189 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 AACSP1-202ENST00000521412 1095 ntBASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 SMCO4-202ENST00000525141 889 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 DDIAS-204ENST00000525388 961 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 AP003062.1-201ENST00000528497 762 ntTSL 3 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 AC027228.1-201ENST00000560094 325 ntTSL 3 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 PEX11A-204ENST00000561224 529 ntTSL 4 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 AC116914.2-201ENST00000571741 291 ntTSL 5 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 ERG-211ENST00000453032 1595 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC16.43■□□□□ 0.22
CCDC88AQ3V6T2 SUCLG2-203ENST00000492795 1512 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC88AQ3V6T2 GAPDH-205ENST00000396861 1348 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CCDC88AQ3V6T2 AC040160.2-201ENST00000623816 1675 ntBASIC16.42■□□□□ 0.22
CCDC88AQ3V6T2 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CCDC88AQ3V6T2 Metazoa_SRP.8-201ENST00000398067 251 ntBASIC16.42■□□□□ 0.22
CCDC88AQ3V6T2 TEX33-203ENST00000405091 1149 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
CCDC88AQ3V6T2 AL022725.1-201ENST00000436283 369 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC88AQ3V6T2 LINC01823-204ENST00000438722 794 ntTSL 3 BASIC16.42■□□□□ 0.22
CCDC88AQ3V6T2 AC005011.1-201ENST00000455206 210 ntBASIC16.42■□□□□ 0.22
CCDC88AQ3V6T2 AL583722.3-201ENST00000553433 503 ntTSL 4 BASIC16.42■□□□□ 0.22
CCDC88AQ3V6T2 LINC02328-202ENST00000554647 522 ntTSL 4 BASIC16.42■□□□□ 0.22
CCDC88AQ3V6T2 AC133555.4-201ENST00000569081 152 ntBASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms