Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
BDNFP23560 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
BDNFP23560 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
BDNFP23560 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
BDNFP23560 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
BDNFP23560 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.58□□□□□ -0.08
BDNFP23560 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
BDNFP23560 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
BDNFP23560 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
BDNFP23560 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
BDNFP23560 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
BDNFP23560 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
BDNFP23560 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC14.58□□□□□ -0.08
BDNFP23560 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14.58□□□□□ -0.08
BDNFP23560 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC14.58□□□□□ -0.08
BDNFP23560 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
BDNFP23560 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC14.58□□□□□ -0.08
BDNFP23560 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC14.58□□□□□ -0.08
BDNFP23560 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
BDNFP23560 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
BDNFP23560 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
BDNFP23560 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
BDNFP23560 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
BDNFP23560 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC14.58□□□□□ -0.08
BDNFP23560 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC14.58□□□□□ -0.08
BDNFP23560 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC14.58□□□□□ -0.08
BDNFP23560 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC14.58□□□□□ -0.08
BDNFP23560 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC14.58□□□□□ -0.08
BDNFP23560 OR2A1-AS1-210ENST00000496968 531 ntBASIC14.58□□□□□ -0.08
BDNFP23560 AC093826.1-201ENST00000508655 993 ntBASIC14.58□□□□□ -0.08
BDNFP23560 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC14.58□□□□□ -0.08
BDNFP23560 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC14.58□□□□□ -0.08
BDNFP23560 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.58□□□□□ -0.08
BDNFP23560 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
BDNFP23560 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
BDNFP23560 CTBP2P8-201ENST00000422584 1330 ntBASIC14.58□□□□□ -0.08
BDNFP23560 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC14.58□□□□□ -0.08
BDNFP23560 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
BDNFP23560 FUCA1P1-201ENST00000374476 1351 ntBASIC14.58□□□□□ -0.08
BDNFP23560 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.58□□□□□ -0.08
BDNFP23560 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC14.58□□□□□ -0.08
BDNFP23560 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
BDNFP23560 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
BDNFP23560 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
BDNFP23560 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC14.57□□□□□ -0.08
BDNFP23560 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC14.57□□□□□ -0.08
BDNFP23560 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.57□□□□□ -0.08
BDNFP23560 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC14.57□□□□□ -0.08
BDNFP23560 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 STK16-203ENST00000409516 895 ntTSL 2 BASIC14.57□□□□□ -0.08
BDNFP23560 ACTBP14-201ENST00000411655 1089 ntBASIC14.57□□□□□ -0.08
BDNFP23560 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC14.57□□□□□ -0.08
BDNFP23560 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC14.57□□□□□ -0.08
BDNFP23560 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC14.57□□□□□ -0.08
BDNFP23560 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC14.57□□□□□ -0.08
BDNFP23560 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC14.57□□□□□ -0.08
BDNFP23560 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC14.57□□□□□ -0.08
BDNFP23560 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC14.57□□□□□ -0.08
BDNFP23560 RPS23-207ENST00000511844 530 ntTSL 2 BASIC14.57□□□□□ -0.08
BDNFP23560 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC14.57□□□□□ -0.08
BDNFP23560 CD44-224ENST00000526669 870 ntTSL 5 BASIC14.57□□□□□ -0.08
BDNFP23560 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC14.57□□□□□ -0.08
BDNFP23560 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 COX5A-205ENST00000568517 582 ntTSL 3 BASIC14.57□□□□□ -0.08
BDNFP23560 MIR5196-201ENST00000578146 115 ntBASIC14.57□□□□□ -0.08
BDNFP23560 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
BDNFP23560 COQ4-204ENST00000608951 781 ntTSL 2 BASIC14.57□□□□□ -0.08
BDNFP23560 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC14.57□□□□□ -0.08
BDNFP23560 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC14.57□□□□□ -0.08
BDNFP23560 LINC00431-202ENST00000636375 159 ntBASIC14.57□□□□□ -0.08
BDNFP23560 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
BDNFP23560 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
BDNFP23560 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC14.57□□□□□ -0.08
BDNFP23560 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.57□□□□□ -0.08
BDNFP23560 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC14.57□□□□□ -0.08
BDNFP23560 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC14.57□□□□□ -0.08
BDNFP23560 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.08
BDNFP23560 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BDNFP23560 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
BDNFP23560 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.56□□□□□ -0.08
BDNFP23560 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC14.56□□□□□ -0.08
BDNFP23560 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 AC245140.2-201ENST00000624054 1939 ntBASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms