Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
COL6A3P12111 USP28-214ENST00000545540 3431 ntTSL 2 BASIC13.7□□□□□ -0.22
COL6A3P12111 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.7□□□□□ -0.22
COL6A3P12111 HTR3D-202ENST00000382489 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A3P12111 TRIM39-RPP21-201ENST00000623385 1698 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
COL6A3P12111 AP000897.1-201ENST00000584036 1613 ntBASIC13.7□□□□□ -0.22
COL6A3P12111 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC13.7□□□□□ -0.22
COL6A3P12111 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A3P12111 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A3P12111 CDCA7L-201ENST00000356195 2915 ntTSL 2 BASIC13.7□□□□□ -0.22
COL6A3P12111 AZGP1-201ENST00000292401 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A3P12111 RAE1-209ENST00000527947 1503 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A3P12111 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC13.7□□□□□ -0.22
COL6A3P12111 HLA-DQA1-203ENST00000395363 1206 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
COL6A3P12111 AL356481.1-201ENST00000434999 578 ntTSL 5 BASIC13.7□□□□□ -0.22
COL6A3P12111 AC079360.1-201ENST00000543848 434 ntTSL 3 BASIC13.7□□□□□ -0.22
COL6A3P12111 AC020656.1-201ENST00000548900 599 ntTSL 3 BASIC13.7□□□□□ -0.22
COL6A3P12111 NPLOC4-214ENST00000573876 560 ntTSL 4 BASIC13.7□□□□□ -0.22
COL6A3P12111 SH3GL1P2-201ENST00000582245 1082 ntBASIC13.7□□□□□ -0.22
COL6A3P12111 AL590556.2-201ENST00000637118 1162 ntTSL 5 BASIC13.7□□□□□ -0.22
COL6A3P12111 AP001267.2-201ENST00000532619 2086 ntBASIC13.7□□□□□ -0.22
COL6A3P12111 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A3P12111 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A3P12111 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A3P12111 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC13.7□□□□□ -0.22
COL6A3P12111 ALOX15P2-201ENST00000340858 1897 ntBASIC13.69□□□□□ -0.22
COL6A3P12111 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 CNOT4-204ENST00000414802 1687 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A3P12111 LINC00337-202ENST00000441724 1138 ntTSL 3 BASIC13.69□□□□□ -0.22
COL6A3P12111 KRT18P15-201ENST00000458108 1291 ntBASIC13.69□□□□□ -0.22
COL6A3P12111 TRAPPC2L-214ENST00000568583 801 ntTSL 3 BASIC13.69□□□□□ -0.22
COL6A3P12111 AC006236.1-201ENST00000576249 797 ntBASIC13.69□□□□□ -0.22
COL6A3P12111 AP003028.1-201ENST00000577699 1033 ntTSL 5 BASIC13.69□□□□□ -0.22
COL6A3P12111 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC13.69□□□□□ -0.22
COL6A3P12111 AC090826.3-201ENST00000611178 834 ntBASIC13.69□□□□□ -0.22
COL6A3P12111 KATNAL2-202ENST00000356157 1635 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
COL6A3P12111 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A3P12111 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 ELOVL3-201ENST00000370005 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 LILRA5-201ENST00000432233 1363 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
COL6A3P12111 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.69□□□□□ -0.22
COL6A3P12111 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A3P12111 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 LINC02376-201ENST00000536330 724 ntTSL 3 BASIC13.69□□□□□ -0.22
COL6A3P12111 COPZ1-207ENST00000549116 736 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A3P12111 KRT16P4-202ENST00000580052 362 ntTSL 3 BASIC13.69□□□□□ -0.22
COL6A3P12111 AC021683.4-201ENST00000623348 1099 ntBASIC13.69□□□□□ -0.22
COL6A3P12111 NR4A1-201ENST00000243050 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A3P12111 APTX-201ENST00000309615 1859 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 CDC20-201ENST00000310955 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC13.69□□□□□ -0.22
COL6A3P12111 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A3P12111 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
COL6A3P12111 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
COL6A3P12111 BANP-201ENST00000286122 2368 ntTSL 5 BASIC13.69□□□□□ -0.22
COL6A3P12111 PPT1-215ENST00000641471 2368 ntBASIC13.69□□□□□ -0.22
COL6A3P12111 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
COL6A3P12111 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A3P12111 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
COL6A3P12111 HNRNPC-202ENST00000420743 1559 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A3P12111 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 Z93242.2-201ENST00000445666 394 ntBASIC13.69□□□□□ -0.22
COL6A3P12111 SAA2-206ENST00000530400 323 ntTSL 3 BASIC13.69□□□□□ -0.22
COL6A3P12111 AC127537.3-201ENST00000566532 749 ntBASIC13.69□□□□□ -0.22
COL6A3P12111 PITPNC1-204ENST00000581322 1124 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A3P12111 ZEB1-AS1-207ENST00000606286 476 ntTSL 4 BASIC13.69□□□□□ -0.22
COL6A3P12111 LINC00663-201ENST00000586645 1357 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A3P12111 AJ011931.1-201ENST00000618749 2492 ntBASIC13.68□□□□□ -0.22
COL6A3P12111 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
COL6A3P12111 MRPL43-202ENST00000318325 2134 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 GHRL-201ENST00000287656 1313 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A3P12111 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A3P12111 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A3P12111 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
COL6A3P12111 SNORD23-201ENST00000408876 110 ntBASIC13.68□□□□□ -0.22
COL6A3P12111 POLR2H-205ENST00000443489 807 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A3P12111 RN7SL164P-201ENST00000482613 303 ntBASIC13.68□□□□□ -0.22
COL6A3P12111 C12orf73-205ENST00000547945 463 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
COL6A3P12111 C14orf132-201ENST00000553764 562 ntTSL 4 BASIC13.68□□□□□ -0.22
COL6A3P12111 SLC39A9-210ENST00000557046 855 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms