Protein–RNA interactions for Protein: Q9Y2W7

KCNIP3, Calsenilin, humanhuman

Predictions only

Length 256 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3Q9Y2W7 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 BAATP1-201ENST00000412284 1225 ntBASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 ST13P19-201ENST00000442505 1124 ntBASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 AL591471.1-201ENST00000621855 229 ntBASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 LINC00638-201ENST00000555578 2518 ntBASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 DRG2-202ENST00000395726 1897 ntTSL 5 BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 LIMS1-205ENST00000410093 1526 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 WDR47-201ENST00000357672 4144 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 TENM3-204ENST00000511685 10896 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 FCHO1-221ENST00000597512 2934 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 RPS6KA2-211ENST00000510118 5992 ntTSL 2 BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 C16orf62-215ENST00000542263 3138 ntTSL 2 BASIC11.69□□□□□ -0.54
KCNIP3Q9Y2W7 C1GALT1-205ENST00000436587 6235 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 ZFHX2-202ENST00000419474 9182 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 PRRG4-201ENST00000257836 5530 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 SHPRH-202ENST00000367503 5237 ntTSL 5 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 MUC20-203ENST00000436408 2463 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 RRBP1-206ENST00000455029 2485 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 ATG5-202ENST00000360666 2712 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 ZNF185-205ENST00000370270 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 KLF8-202ENST00000374928 4821 ntTSL 2 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 LINC01756-201ENST00000417651 2148 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 SHMT1P1-201ENST00000419974 1312 ntBASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 CACNA1F-201ENST00000323022 6037 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 MEP1A-201ENST00000230588 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 AC012441.1-201ENST00000446669 685 ntBASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 OR10B1P-201ENST00000601666 907 ntBASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 ETV2-208ENST00000621247 941 ntTSL 5 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 AC090386.2-201ENST00000623010 1039 ntBASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 LITAF-203ENST00000413364 2292 ntTSL 2 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 ACO2-201ENST00000216254 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 AL133387.2-201ENST00000422661 2222 ntTSL 2 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 TP73-206ENST00000378288 5120 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 ALG8-202ENST00000376156 1677 ntTSL 2 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 AL138709.1-201ENST00000614840 1693 ntBASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 PANK3-201ENST00000239231 10506 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 NTRK2-208ENST00000395882 7111 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 STRA6-222ENST00000616000 2843 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 GUCY1B3-204ENST00000505154 2316 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
KCNIP3Q9Y2W7 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
KCNIP3Q9Y2W7 FOXN4-202ENST00000355216 2958 ntTSL 2 BASIC11.67□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms