Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 MPV17-204ENST00000399052 749 ntTSL 4 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 COQ10BP2-201ENST00000513804 724 ntBASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 AP005264.5-201ENST00000590066 467 ntBASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 AL031595.1-201ENST00000623969 4709 ntBASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 PDXDC2P-206ENST00000534700 1315 ntBASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 FTX-216ENST00000638985 1367 ntTSL 5 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 GGCT-203ENST00000409144 836 ntTSL 2 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 AC078991.1-201ENST00000437297 610 ntBASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 CD81-209ENST00000492627 886 ntTSL 3 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 AP002803.1-201ENST00000528836 498 ntBASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 FMO6P-201ENST00000236166 1620 ntBASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 TNN-202ENST00000621086 4234 ntTSL 5 BASIC13.81□□□□□ -0.2
TRIM39Q9HCM9 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms