Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
FOXA1P55317 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC13.43□□□□□ -0.26
FOXA1P55317 FLAD1-207ENST00000368433 2656 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA1P55317 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 SPACA9-202ENST00000356311 2243 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA1P55317 EML1-203ENST00000334192 4064 ntTSL 5 BASIC13.43□□□□□ -0.26
FOXA1P55317 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
FOXA1P55317 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 DNAJC30-201ENST00000395176 2485 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
FOXA1P55317 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 RIPK4-201ENST00000332512 3889 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC13.42□□□□□ -0.26
FOXA1P55317 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
FOXA1P55317 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC13.42□□□□□ -0.26
FOXA1P55317 PPP1R8-203ENST00000373931 2651 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
FOXA1P55317 EHMT2-202ENST00000375530 3856 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
FOXA1P55317 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 Z97192.2-201ENST00000393264 2379 ntTSL 2 BASIC13.42□□□□□ -0.26
FOXA1P55317 GK-203ENST00000378943 3707 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
FOXA1P55317 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 KRT17P5-201ENST00000332088 839 ntBASIC13.42□□□□□ -0.26
FOXA1P55317 RN7SKP214-201ENST00000364208 315 ntBASIC13.42□□□□□ -0.26
FOXA1P55317 HNRNPA1P41-201ENST00000397777 928 ntBASIC13.42□□□□□ -0.26
FOXA1P55317 AC005722.1-201ENST00000431878 964 ntBASIC13.42□□□□□ -0.26
FOXA1P55317 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC13.42□□□□□ -0.26
FOXA1P55317 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC13.42□□□□□ -0.26
FOXA1P55317 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC13.42□□□□□ -0.26
FOXA1P55317 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC13.42□□□□□ -0.26
FOXA1P55317 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC13.42□□□□□ -0.26
FOXA1P55317 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC13.42□□□□□ -0.26
FOXA1P55317 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 MEG3_2.1-201ENST00000611456 105 ntBASIC13.42□□□□□ -0.26
FOXA1P55317 AC091271.1-201ENST00000611877 1162 ntBASIC13.42□□□□□ -0.26
FOXA1P55317 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC13.42□□□□□ -0.26
FOXA1P55317 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC13.42□□□□□ -0.26
FOXA1P55317 VENTXP1-201ENST00000569334 2716 ntBASIC13.42□□□□□ -0.26
FOXA1P55317 AC009123.1-202ENST00000565643 2551 ntTSL 2 BASIC13.42□□□□□ -0.26
FOXA1P55317 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC13.42□□□□□ -0.26
FOXA1P55317 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC13.42□□□□□ -0.26
FOXA1P55317 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC13.42□□□□□ -0.26
FOXA1P55317 TRPM4-202ENST00000427978 3444 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 KLC2-206ENST00000417856 3015 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
FOXA1P55317 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA1P55317 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC13.42□□□□□ -0.26
FOXA1P55317 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
FOXA1P55317 CTDP1-202ENST00000299543 3380 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
FOXA1P55317 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 MALL-201ENST00000272462 3061 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 ADAM8-201ENST00000415217 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
FOXA1P55317 C12orf66-201ENST00000311915 2698 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC13.41□□□□□ -0.26
FOXA1P55317 PRKAB1-205ENST00000540121 1673 ntTSL 5 BASIC13.41□□□□□ -0.26
FOXA1P55317 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 POLL-202ENST00000339310 2289 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 AGER-203ENST00000375065 665 ntTSL 2 BASIC13.41□□□□□ -0.26
FOXA1P55317 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC13.41□□□□□ -0.26
FOXA1P55317 AL031687.1-201ENST00000450586 2137 ntTSL 2 BASIC13.41□□□□□ -0.26
FOXA1P55317 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
FOXA1P55317 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC13.41□□□□□ -0.26
FOXA1P55317 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC13.41□□□□□ -0.26
FOXA1P55317 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC13.41□□□□□ -0.26
FOXA1P55317 NDUFB10P1-201ENST00000567319 521 ntBASIC13.41□□□□□ -0.26
FOXA1P55317 NKG7-204ENST00000595217 816 ntTSL 2 BASIC13.41□□□□□ -0.26
FOXA1P55317 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC13.41□□□□□ -0.26
FOXA1P55317 MCF2L-213ENST00000421756 3560 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 C1QTNF9-202ENST00000382071 1854 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
FOXA1P55317 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 SLC4A11-207ENST00000539553 2832 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
FOXA1P55317 POLD1-205ENST00000595904 3402 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 ZSCAN32-203ENST00000396852 3169 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 BAIAP3-203ENST00000421665 3875 ntTSL 2 BASIC13.41□□□□□ -0.26
FOXA1P55317 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC13.41□□□□□ -0.26
FOXA1P55317 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
FOXA1P55317 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 DYNC1I2-204ENST00000409317 2196 ntTSL 5 BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms