Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
LIG3P49916 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC14.72□□□□□ -0.05
LIG3P49916 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
LIG3P49916 FNTAP2-201ENST00000430308 634 ntBASIC14.72□□□□□ -0.05
LIG3P49916 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC14.72□□□□□ -0.05
LIG3P49916 AC012441.2-201ENST00000444843 739 ntBASIC14.72□□□□□ -0.05
LIG3P49916 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 AC104073.2-201ENST00000453737 312 ntBASIC14.72□□□□□ -0.05
LIG3P49916 AKR7A2P1-201ENST00000460134 915 ntBASIC14.72□□□□□ -0.05
LIG3P49916 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC14.72□□□□□ -0.05
LIG3P49916 RPL18P13-201ENST00000478088 569 ntBASIC14.72□□□□□ -0.05
LIG3P49916 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC14.72□□□□□ -0.05
LIG3P49916 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
LIG3P49916 EID1-202ENST00000560490 584 ntTSL 3 BASIC14.72□□□□□ -0.05
LIG3P49916 RN7SL163P-201ENST00000583100 276 ntBASIC14.72□□□□□ -0.05
LIG3P49916 AC005324.6-201ENST00000587972 613 ntBASIC14.72□□□□□ -0.05
LIG3P49916 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC14.72□□□□□ -0.05
LIG3P49916 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC14.72□□□□□ -0.05
LIG3P49916 PCBP2-OT1-201ENST00000634357 590 ntBASIC14.72□□□□□ -0.05
LIG3P49916 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
LIG3P49916 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
LIG3P49916 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 HNF4A-204ENST00000415691 2302 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 AL390066.1-201ENST00000456414 2302 ntTSL 2 BASIC14.72□□□□□ -0.05
LIG3P49916 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
LIG3P49916 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
LIG3P49916 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.72□□□□□ -0.05
LIG3P49916 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 TDRD9-202ENST00000409874 4782 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
LIG3P49916 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 WARS-203ENST00000358655 2466 ntTSL 2 BASIC14.72□□□□□ -0.05
LIG3P49916 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 SERPINB1-201ENST00000380739 2619 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC14.72□□□□□ -0.05
LIG3P49916 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 POLG-202ENST00000442287 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 TLE3-220ENST00000559929 3408 ntTSL 5 BASIC14.72□□□□□ -0.05
LIG3P49916 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
LIG3P49916 INTS3-204ENST00000435409 3597 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
LIG3P49916 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 TNK2-208ENST00000428187 4235 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 AC060814.4-201ENST00000594169 2163 ntBASIC14.71□□□□□ -0.05
LIG3P49916 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 ZBED2-201ENST00000317012 2311 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
LIG3P49916 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 AL008718.2-201ENST00000609206 1313 ntBASIC14.71□□□□□ -0.05
LIG3P49916 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
LIG3P49916 RBMS1-201ENST00000348849 4273 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
LIG3P49916 GNAL-203ENST00000423027 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 AP003969.2-201ENST00000623739 2275 ntBASIC14.71□□□□□ -0.05
LIG3P49916 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 ANGPTL2-201ENST00000373417 2575 ntTSL 2 BASIC14.71□□□□□ -0.05
LIG3P49916 CELF2-216ENST00000637215 2724 ntTSL 5 BASIC14.71□□□□□ -0.05
LIG3P49916 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 DPM3-202ENST00000368399 517 ntBASIC14.71□□□□□ -0.05
LIG3P49916 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
LIG3P49916 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC14.71□□□□□ -0.05
LIG3P49916 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 SCARNA20.5-201ENST00000516991 142 ntBASIC14.71□□□□□ -0.05
LIG3P49916 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC14.71□□□□□ -0.05
LIG3P49916 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
LIG3P49916 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC14.71□□□□□ -0.05
LIG3P49916 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
LIG3P49916 AC009884.2-201ENST00000603110 324 ntBASIC14.71□□□□□ -0.05
LIG3P49916 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
LIG3P49916 YWHAQ-202ENST00000381844 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC14.71□□□□□ -0.05
LIG3P49916 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC14.71□□□□□ -0.05
LIG3P49916 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC14.71□□□□□ -0.05
LIG3P49916 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.71□□□□□ -0.05
LIG3P49916 DSCAML1-203ENST00000527706 6099 ntTSL 5 BASIC14.71□□□□□ -0.05
LIG3P49916 VASH2-203ENST00000366965 3572 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 KIF17-202ENST00000375044 3572 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 KIF21B-204ENST00000461742 5428 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 C21orf62-AS1-201ENST00000382375 2453 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIG3P49916 H1FX-AS1-201ENST00000383461 2600 ntTSL 2 BASIC14.71□□□□□ -0.06
LIG3P49916 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
LIG3P49916 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
LIG3P49916 DFFB-205ENST00000378209 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
LIG3P49916 CELF4-218ENST00000591287 3757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
LIG3P49916 ZNF568-206ENST00000455427 2378 ntTSL 2 BASIC14.7□□□□□ -0.06
LIG3P49916 FAM86JP-201ENST00000467239 1910 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms