Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 PLIN3-201ENST00000221957 2333 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 TRIM3-203ENST00000525074 3044 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 AGAP12P-202ENST00000603888 2141 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 CICP9-201ENST00000444451 1913 ntBASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 NTRK2-203ENST00000323115 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 COX7A2L-202ENST00000378669 3056 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 HOMER2P2-201ENST00000451621 847 ntBASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 PFN2-215ENST00000497148 743 ntTSL 4 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 AHRR-211ENST00000515206 462 ntTSL 5 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 HNRNPA1P36-201ENST00000521313 955 ntBASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 SKA2-205ENST00000580541 689 ntTSL 3 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 AC005962.1-201ENST00000584100 773 ntBASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 AC233724.13-201ENST00000598383 410 ntBASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 IL9RP3-201ENST00000442856 1674 ntBASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 ZFYVE19-209ENST00000564258 2059 ntTSL 2 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 UBTFL8-201ENST00000426903 2112 ntBASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 COG5-201ENST00000297135 4060 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 RAB37-203ENST00000392612 2528 ntTSL 2 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 CYTH1-203ENST00000585509 3315 ntTSL 5 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 TRIM35-201ENST00000305364 4229 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 TXNDC17-201ENST00000250101 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 SARS-202ENST00000369923 1882 ntTSL 5 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 TNK1-201ENST00000570896 3122 ntAPPRIS P3 TSL 5 BASIC13.55□□□□□ -0.24
CCDC28BQ9BUN5 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 AC092171.2-201ENST00000444210 3251 ntTSL 5 BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 AC068580.3-201ENST00000449248 2015 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 ENDOV-203ENST00000517795 2548 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 EIF4HP1-201ENST00000453115 687 ntBASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 AC007551.1-201ENST00000457394 519 ntBASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 CYMP-203ENST00000474680 1263 ntBASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 CHCHD2P2-201ENST00000503744 321 ntBASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 CENPX-208ENST00000584347 799 ntTSL 2 BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 ZNF473-203ENST00000445728 2833 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 EVA1A-201ENST00000233712 1815 ntAPPRIS P2 TSL 2 BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 AC022400.8-201ENST00000623453 3599 ntBASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 DCDC2-202ENST00000378454 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 CACNG3-201ENST00000005284 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 PER1-202ENST00000354903 3115 ntTSL 2 BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 CES1-201ENST00000360526 2006 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms