Protein–RNA interactions for Protein: Q2I0M5

RSPO4, R-spondin-4, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO4Q2I0M5 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 GZMH-201ENST00000216338 909 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 NR0B1-201ENST00000378963 475 ntTSL 2 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 NANOS3-202ENST00000397555 769 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 GSG1L2-201ENST00000399363 882 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 SNU13-204ENST00000402458 462 ntTSL 3 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 AC041040.1-201ENST00000425197 460 ntBASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 AC053503.4-201ENST00000431827 224 ntTSL 5 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 PTPA-219ENST00000435305 530 ntTSL 2 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 AC022382.1-201ENST00000602768 336 ntBASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 AC127002.1-201ENST00000619123 455 ntBASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 GLDC-216ENST00000639639 1559 ntTSL 3 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 RCL1-206ENST00000442869 1644 ntTSL 3 BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RSPO4Q2I0M5 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 CRYGD-201ENST00000264376 619 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 RPLP1-202ENST00000357790 445 ntTSL 2 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 NAA10-205ENST00000393712 908 ntTSL 5 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 TMEM256P1-201ENST00000430550 340 ntBASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 PARVG-208ENST00000466375 820 ntTSL 2 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 MYCBP-203ENST00000494695 750 ntTSL 2 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 LINC02507-201ENST00000509370 1028 ntTSL 3 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 AC090589.3-201ENST00000524412 574 ntTSL 5 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 CD44-224ENST00000526669 870 ntTSL 5 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 COX14-204ENST00000550654 580 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 OSGIN1-206ENST00000565123 833 ntTSL 2 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 Metazoa_SRP.147-201ENST00000576563 312 ntBASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 AC138150.1-201ENST00000589950 570 ntTSL 4 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 PSME3-213ENST00000592169 826 ntTSL 3 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 AC009812.1-201ENST00000605948 1059 ntBASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 AC116036.2-201ENST00000607592 462 ntBASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 AC008622.3-201ENST00000621170 600 ntBASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 AC099552.4-201ENST00000624248 949 ntBASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 AC023509.3-202ENST00000591834 1609 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 MTHFR-210ENST00000641407 2387 ntBASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 PUF60-204ENST00000456095 1736 ntTSL 5 BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RSPO4Q2I0M5 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms