Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
CLDN6P56747 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC13.29□□□□□ -0.28
CLDN6P56747 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC13.29□□□□□ -0.28
CLDN6P56747 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
CLDN6P56747 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC13.29□□□□□ -0.28
CLDN6P56747 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CLDN6P56747 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.29□□□□□ -0.28
CLDN6P56747 AC103592.1-201ENST00000394513 664 ntBASIC13.29□□□□□ -0.28
CLDN6P56747 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC13.29□□□□□ -0.28
CLDN6P56747 AC092810.2-201ENST00000431570 362 ntBASIC13.29□□□□□ -0.28
CLDN6P56747 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC13.29□□□□□ -0.28
CLDN6P56747 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC13.29□□□□□ -0.28
CLDN6P56747 GOLGA2P8-201ENST00000505201 779 ntBASIC13.29□□□□□ -0.28
CLDN6P56747 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC13.29□□□□□ -0.28
CLDN6P56747 PMEL-214ENST00000550447 901 ntTSL 3 BASIC13.29□□□□□ -0.28
CLDN6P56747 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC13.29□□□□□ -0.28
CLDN6P56747 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC13.29□□□□□ -0.28
CLDN6P56747 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC13.29□□□□□ -0.28
CLDN6P56747 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC13.29□□□□□ -0.28
CLDN6P56747 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC13.29□□□□□ -0.28
CLDN6P56747 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CLDN6P56747 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC13.29□□□□□ -0.28
CLDN6P56747 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 DUT-208ENST00000559540 1441 ntTSL 2 BASIC13.29□□□□□ -0.28
CLDN6P56747 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLDN6P56747 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CLDN6P56747 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC13.28□□□□□ -0.28
CLDN6P56747 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
CLDN6P56747 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
CLDN6P56747 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLDN6P56747 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLDN6P56747 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
CLDN6P56747 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLDN6P56747 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.28□□□□□ -0.28
CLDN6P56747 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.28□□□□□ -0.28
CLDN6P56747 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CLDN6P56747 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLDN6P56747 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLDN6P56747 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CLDN6P56747 ADAMTS7P1-201ENST00000613213 4793 ntBASIC13.28□□□□□ -0.28
CLDN6P56747 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLDN6P56747 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLDN6P56747 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLDN6P56747 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CLDN6P56747 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CLDN6P56747 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLDN6P56747 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLDN6P56747 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC13.28□□□□□ -0.28
CLDN6P56747 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CLDN6P56747 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC13.28□□□□□ -0.28
CLDN6P56747 ZNF877P-201ENST00000437614 612 ntBASIC13.28□□□□□ -0.28
CLDN6P56747 AL136084.1-201ENST00000449172 318 ntBASIC13.28□□□□□ -0.28
CLDN6P56747 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC13.28□□□□□ -0.28
CLDN6P56747 TREX1-203ENST00000456089 629 ntTSL 3 BASIC13.28□□□□□ -0.28
CLDN6P56747 CD81-209ENST00000492627 886 ntTSL 3 BASIC13.28□□□□□ -0.28
CLDN6P56747 CD44-224ENST00000526669 870 ntTSL 5 BASIC13.28□□□□□ -0.28
CLDN6P56747 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC13.28□□□□□ -0.28
CLDN6P56747 SRP14-208ENST00000560773 468 ntTSL 3 BASIC13.28□□□□□ -0.28
CLDN6P56747 RN7SL602P-201ENST00000578326 324 ntBASIC13.28□□□□□ -0.28
CLDN6P56747 RN7SL718P-201ENST00000581254 303 ntBASIC13.28□□□□□ -0.28
CLDN6P56747 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC13.28□□□□□ -0.28
CLDN6P56747 AC005777.1-201ENST00000588332 187 ntBASIC13.28□□□□□ -0.28
CLDN6P56747 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC13.28□□□□□ -0.28
CLDN6P56747 PRMT1P1-201ENST00000604252 1009 ntBASIC13.28□□□□□ -0.28
CLDN6P56747 BX640514.1-201ENST00000583223 1918 ntBASIC13.28□□□□□ -0.28
CLDN6P56747 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CLDN6P56747 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLDN6P56747 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CLDN6P56747 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLDN6P56747 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
CLDN6P56747 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms