Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 OCA2-201ENST00000353809 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 AC010536.1-201ENST00000538868 2611 ntBASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 AGPAT3-202ENST00000327505 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 AGPAT3-204ENST00000398061 3595 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 SSR4P1-201ENST00000415143 412 ntBASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 GOLGA6L11P-201ENST00000417252 1298 ntBASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 AC007389.4-201ENST00000454674 793 ntBASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 USP32P1-208ENST00000506594 1164 ntBASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 AC100850.1-201ENST00000506768 649 ntBASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 CR383656.12-201ENST00000549567 513 ntBASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 RPL35-206ENST00000629845 340 ntTSL 5 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 AL139424.3-202ENST00000641619 917 ntBASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 DCAF12L1-201ENST00000371126 3382 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 CSNK1G3-201ENST00000345990 4635 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 HSPA2-201ENST00000247207 2767 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 LAS1L-202ENST00000374807 2386 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 FRMD1-205ENST00000440994 2857 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 DHX16-201ENST00000376437 1933 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 DDO-201ENST00000368923 1953 ntTSL 2 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 TUBGCP5-208ENST00000620435 3342 ntTSL 2 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 POLL-202ENST00000339310 2289 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 STRCP1-201ENST00000509801 5328 ntBASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 ZDHHC11-201ENST00000283441 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 BISPR-204ENST00000634675 1806 ntTSL 2 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 ZNF689-201ENST00000287461 3547 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 TROVE2-206ENST00000400968 2143 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 AP006294.1-201ENST00000415407 339 ntBASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 OAZ3-203ENST00000453029 729 ntTSL 5 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 AL160314.3-201ENST00000556041 767 ntBASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 RN7SL204P-201ENST00000582831 262 ntBASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 RBM25-204ENST00000526754 1567 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 PCDHGB3-201ENST00000576222 4727 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 SLC39A11-201ENST00000255559 2737 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 CCDC60-201ENST00000327554 2450 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 DRD2-208ENST00000542968 2467 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 AC092139.4-201ENST00000624318 2794 ntBASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 AHCYP2-201ENST00000430630 1300 ntBASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 CLASP2-218ENST00000487200 1940 ntTSL 2 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CCDC28BQ9BUN5 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms