Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
LIG3P49916 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC14.76□□□□□ -0.05
LIG3P49916 NOA1-201ENST00000264230 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC14.76□□□□□ -0.05
LIG3P49916 AGER-203ENST00000375065 665 ntTSL 2 BASIC14.76□□□□□ -0.05
LIG3P49916 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC14.76□□□□□ -0.05
LIG3P49916 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC14.76□□□□□ -0.05
LIG3P49916 SKA2-202ENST00000437036 625 ntTSL 2 BASIC14.76□□□□□ -0.05
LIG3P49916 TUBB8P8-201ENST00000458717 1058 ntBASIC14.76□□□□□ -0.05
LIG3P49916 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14.76□□□□□ -0.05
LIG3P49916 AC044849.1-201ENST00000519737 1188 ntBASIC14.76□□□□□ -0.05
LIG3P49916 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC14.76□□□□□ -0.05
LIG3P49916 AL451050.2-201ENST00000606967 682 ntBASIC14.76□□□□□ -0.05
LIG3P49916 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC14.76□□□□□ -0.05
LIG3P49916 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 NHEJ1-201ENST00000356853 2094 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 USP17L7-201ENST00000530447 2022 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
LIG3P49916 TKT-203ENST00000423525 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 SLC37A4-202ENST00000357590 2356 ntTSL 5 BASIC14.76□□□□□ -0.05
LIG3P49916 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
LIG3P49916 PLEKHB2-202ENST00000403716 4349 ntTSL 3 BASIC14.76□□□□□ -0.05
LIG3P49916 SESN2-201ENST00000253063 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
LIG3P49916 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
LIG3P49916 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
LIG3P49916 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
LIG3P49916 MICAL1-208ENST00000630715 3678 ntTSL 2 BASIC14.76□□□□□ -0.05
LIG3P49916 UBE2I-202ENST00000355803 3253 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
LIG3P49916 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 LOXL3-204ENST00000409549 2897 ntTSL 2 BASIC14.75□□□□□ -0.05
LIG3P49916 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 TMEM164-203ENST00000372072 4975 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
LIG3P49916 PGBD1-201ENST00000259883 3100 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 PIM2-201ENST00000376509 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
LIG3P49916 AC145098.2-201ENST00000623593 3026 ntBASIC14.75□□□□□ -0.05
LIG3P49916 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 AC244394.1-201ENST00000435000 1665 ntBASIC14.75□□□□□ -0.05
LIG3P49916 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC14.75□□□□□ -0.05
LIG3P49916 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC14.75□□□□□ -0.05
LIG3P49916 UAP1L1-201ENST00000360271 3201 ntTSL 2 BASIC14.75□□□□□ -0.05
LIG3P49916 TSC22D1-203ENST00000458659 4820 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
LIG3P49916 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
LIG3P49916 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC14.75□□□□□ -0.05
LIG3P49916 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC14.75□□□□□ -0.05
LIG3P49916 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC14.75□□□□□ -0.05
LIG3P49916 AC091804.1-201ENST00000486888 567 ntBASIC14.75□□□□□ -0.05
LIG3P49916 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC14.75□□□□□ -0.05
LIG3P49916 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC14.75□□□□□ -0.05
LIG3P49916 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
LIG3P49916 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC14.75□□□□□ -0.05
LIG3P49916 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
LIG3P49916 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.75□□□□□ -0.05
LIG3P49916 AC103810.3-201ENST00000583567 96 ntBASIC14.75□□□□□ -0.05
LIG3P49916 KC6-205ENST00000599934 556 ntTSL 4 BASIC14.75□□□□□ -0.05
LIG3P49916 BNIP3P13-201ENST00000599968 566 ntBASIC14.75□□□□□ -0.05
LIG3P49916 AC022748.3-201ENST00000621828 275 ntBASIC14.75□□□□□ -0.05
LIG3P49916 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
LIG3P49916 AC244452.3-201ENST00000636814 210 ntBASIC14.75□□□□□ -0.05
LIG3P49916 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
LIG3P49916 SAMD14-202ENST00000330175 4425 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 HOXB13-201ENST00000290295 3467 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
LIG3P49916 POMT1-203ENST00000372228 3123 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 DPY19L2P2-205ENST00000439473 3994 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC14.75□□□□□ -0.05
LIG3P49916 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
LIG3P49916 TNFRSF8-203ENST00000417814 3593 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
LIG3P49916 HLA-E-201ENST00000376630 2601 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
LIG3P49916 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIG3P49916 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC14.75□□□□□ -0.05
LIG3P49916 ELP4-203ENST00000395934 1961 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LIG3P49916 MAP2K4P1-202ENST00000602584 2539 ntTSL 2 BASIC14.74□□□□□ -0.05
LIG3P49916 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIG3P49916 CARHSP1-202ENST00000396593 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIG3P49916 AMT-239ENST00000636865 1914 ntTSL 5 BASIC14.74□□□□□ -0.05
LIG3P49916 DDX54-201ENST00000306014 4377 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIG3P49916 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
LIG3P49916 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIG3P49916 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms