Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC15.82■□□□□ 0.12
SMARCA1P28370 AL365181.3-201ENST00000605886 3222 ntBASIC15.82■□□□□ 0.12
SMARCA1P28370 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 AC008040.5-201ENST00000599781 1781 ntBASIC15.82■□□□□ 0.12
SMARCA1P28370 AL365181.1-201ENST00000564032 1828 ntBASIC15.82■□□□□ 0.12
SMARCA1P28370 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.82■□□□□ 0.12
SMARCA1P28370 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC15.81■□□□□ 0.12
SMARCA1P28370 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SMARCA1P28370 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SMARCA1P28370 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SMARCA1P28370 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SMARCA1P28370 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SMARCA1P28370 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SMARCA1P28370 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SMARCA1P28370 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SMARCA1P28370 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SMARCA1P28370 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC15.81■□□□□ 0.12
SMARCA1P28370 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
SMARCA1P28370 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SMARCA1P28370 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
SMARCA1P28370 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SMARCA1P28370 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
SMARCA1P28370 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
SMARCA1P28370 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
SMARCA1P28370 IGF1-203ENST00000392904 761 ntTSL 5 BASIC15.81■□□□□ 0.12
SMARCA1P28370 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
SMARCA1P28370 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SMARCA1P28370 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SMARCA1P28370 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC15.81■□□□□ 0.12
SMARCA1P28370 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC15.81■□□□□ 0.12
SMARCA1P28370 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC15.81■□□□□ 0.12
SMARCA1P28370 HNRNPA1P56-201ENST00000505767 954 ntBASIC15.81■□□□□ 0.12
SMARCA1P28370 RHPN1-AS1-201ENST00000518049 1918 ntBASIC15.81■□□□□ 0.12
SMARCA1P28370 ADRA1A-210ENST00000519229 1838 ntTSL 5 BASIC15.81■□□□□ 0.12
SMARCA1P28370 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC15.81■□□□□ 0.12
SMARCA1P28370 RBM25-204ENST00000526754 1567 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SMARCA1P28370 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SMARCA1P28370 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC15.81■□□□□ 0.12
SMARCA1P28370 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC15.81■□□□□ 0.12
SMARCA1P28370 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SMARCA1P28370 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC15.81■□□□□ 0.12
SMARCA1P28370 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC15.81■□□□□ 0.12
SMARCA1P28370 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC15.81■□□□□ 0.12
SMARCA1P28370 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SMARCA1P28370 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SMARCA1P28370 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SMARCA1P28370 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SMARCA1P28370 CICP4-201ENST00000447359 2812 ntBASIC15.81■□□□□ 0.12
SMARCA1P28370 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SMARCA1P28370 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC15.81■□□□□ 0.12
SMARCA1P28370 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SMARCA1P28370 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SMARCA1P28370 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SMARCA1P28370 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SMARCA1P28370 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SMARCA1P28370 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC15.8■□□□□ 0.12
SMARCA1P28370 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC15.8■□□□□ 0.12
SMARCA1P28370 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC15.8■□□□□ 0.12
SMARCA1P28370 AC092978.1-202ENST00000637590 1327 ntBASIC15.8■□□□□ 0.12
SMARCA1P28370 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
SMARCA1P28370 C20orf141-201ENST00000380589 730 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SMARCA1P28370 CFL1P6-201ENST00000400899 494 ntBASIC15.8■□□□□ 0.12
SMARCA1P28370 RPL10-203ENST00000406022 748 ntTSL 3 BASIC15.8■□□□□ 0.12
SMARCA1P28370 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
SMARCA1P28370 FAM21EP-201ENST00000417804 985 ntBASIC15.8■□□□□ 0.12
SMARCA1P28370 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC15.8■□□□□ 0.12
SMARCA1P28370 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 MT2A-202ENST00000561491 581 ntTSL 2 BASIC15.8■□□□□ 0.12
SMARCA1P28370 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC15.8■□□□□ 0.12
SMARCA1P28370 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC15.8■□□□□ 0.12
SMARCA1P28370 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC15.8■□□□□ 0.12
SMARCA1P28370 AL132780.4-201ENST00000624870 1135 ntBASIC15.8■□□□□ 0.12
SMARCA1P28370 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
SMARCA1P28370 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC15.8■□□□□ 0.12
SMARCA1P28370 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms