Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC010976.2-201ENST00000609697 852 ntBASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 HPX-213ENST00000615166 826 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 GOLGA8VP-201ENST00000559009 1798 ntBASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 AMT-256ENST00000638063 1783 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC3Q9BQI4 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 SLC44A1-202ENST00000374723 9640 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 SON-203ENST00000381679 7860 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 CSNK1G3-201ENST00000345990 4635 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 FAM90A21P-201ENST00000510875 1396 ntBASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 FAM90A15P-201ENST00000514465 1395 ntBASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 FAM90A6P-201ENST00000515148 1394 ntBASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 FAM90A16P-201ENST00000526662 1395 ntBASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 FAM90A9P-201ENST00000527940 1395 ntBASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 FAM90A5P-201ENST00000528738 1395 ntBASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 FAM90A14P-201ENST00000530386 1395 ntBASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 FAM90A13P-201ENST00000534703 1395 ntBASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 OR52M2P-201ENST00000414298 959 ntBASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 HMGA1P1-201ENST00000415560 1062 ntBASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 AL022344.2-201ENST00000568976 968 ntBASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 RN7SL455P-201ENST00000580629 282 ntBASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 NAMA-206ENST00000605377 509 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 AC002472.4-201ENST00000641915 272 ntBASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 ARSD-202ENST00000381154 5159 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 AC005089.1-201ENST00000619486 2241 ntBASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 UNC13B-206ENST00000617908 6432 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 UNC13B-207ENST00000619578 6426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 GOLGA8DP-202ENST00000341390 2184 ntBASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC3Q9BQI4 AC027601.5-201ENST00000624065 2482 ntBASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms