Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 CCT8L2-201ENST00000359963 2060 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
LIG3P49916 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 WNT9A-201ENST00000272164 3971 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC14.78□□□□□ -0.04
LIG3P49916 SMPDL3B-206ENST00000549094 1611 ntTSL 5 BASIC14.78□□□□□ -0.04
LIG3P49916 DCDC2-202ENST00000378454 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
LIG3P49916 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 MKRN5P-201ENST00000445263 1467 ntBASIC14.78□□□□□ -0.04
LIG3P49916 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
LIG3P49916 MRPL37P1-201ENST00000592451 1337 ntBASIC14.78□□□□□ -0.04
LIG3P49916 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
LIG3P49916 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 RBM38-204ENST00000371219 760 ntTSL 2 BASIC14.78□□□□□ -0.04
LIG3P49916 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC14.78□□□□□ -0.04
LIG3P49916 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC14.78□□□□□ -0.04
LIG3P49916 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC14.78□□□□□ -0.04
LIG3P49916 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 RNMTL1P1-201ENST00000454103 560 ntBASIC14.78□□□□□ -0.04
LIG3P49916 CICP12-201ENST00000455801 843 ntBASIC14.78□□□□□ -0.04
LIG3P49916 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.78□□□□□ -0.04
LIG3P49916 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC14.78□□□□□ -0.04
LIG3P49916 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC14.78□□□□□ -0.04
LIG3P49916 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 NAT9-222ENST00000583476 583 ntTSL 3 BASIC14.78□□□□□ -0.04
LIG3P49916 AC132192.2-201ENST00000596206 1147 ntBASIC14.78□□□□□ -0.04
LIG3P49916 AL023803.2-201ENST00000620080 638 ntBASIC14.78□□□□□ -0.04
LIG3P49916 AC027601.3-201ENST00000622907 509 ntBASIC14.78□□□□□ -0.04
LIG3P49916 AC079416.2-201ENST00000625035 1193 ntBASIC14.78□□□□□ -0.04
LIG3P49916 BNIP3L-201ENST00000380629 3610 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC14.78□□□□□ -0.04
LIG3P49916 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC14.78□□□□□ -0.04
LIG3P49916 CPN2-201ENST00000323830 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 ZFAND3-203ENST00000373391 3001 ntTSL 5 BASIC14.78□□□□□ -0.04
LIG3P49916 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC14.78□□□□□ -0.04
LIG3P49916 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.78□□□□□ -0.04
LIG3P49916 HSPA2-201ENST00000247207 2767 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
LIG3P49916 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 AL021155.1-201ENST00000438808 2637 ntBASIC14.78□□□□□ -0.04
LIG3P49916 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIG3P49916 ARAF-203ENST00000377045 2458 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIG3P49916 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIG3P49916 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIG3P49916 CCNY-203ENST00000374704 3960 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIG3P49916 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC14.77□□□□□ -0.04
LIG3P49916 SFTPA1-202ENST00000419470 2210 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
LIG3P49916 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIG3P49916 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC14.77□□□□□ -0.04
LIG3P49916 BX255923.2-202ENST00000620833 2874 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
LIG3P49916 MNT-201ENST00000174618 4996 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIG3P49916 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.04
LIG3P49916 SAP30BP-225ENST00000584667 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIG3P49916 ELN-204ENST00000357036 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIG3P49916 NRP2-202ENST00000357118 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIG3P49916 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC14.77□□□□□ -0.04
LIG3P49916 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC14.77□□□□□ -0.05
LIG3P49916 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
LIG3P49916 SERPINA13P-202ENST00000478994 924 ntBASIC14.77□□□□□ -0.05
LIG3P49916 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC14.77□□□□□ -0.05
LIG3P49916 HNRNPA1P36-201ENST00000521313 955 ntBASIC14.77□□□□□ -0.05
LIG3P49916 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
LIG3P49916 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC14.77□□□□□ -0.05
LIG3P49916 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
LIG3P49916 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC14.77□□□□□ -0.05
LIG3P49916 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
LIG3P49916 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LIG3P49916 RRBP1-206ENST00000455029 2485 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
LIG3P49916 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LIG3P49916 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
LIG3P49916 MYO1D-206ENST00000579584 3500 ntTSL 2 BASIC14.77□□□□□ -0.05
LIG3P49916 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LIG3P49916 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
LIG3P49916 PCDHGB3-201ENST00000576222 4727 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
LIG3P49916 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
LIG3P49916 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LIG3P49916 TBC1D8B-202ENST00000310452 2589 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
LIG3P49916 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
LIG3P49916 ZNF799-202ENST00000430385 2583 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
LIG3P49916 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 ENDOV-203ENST00000517795 2548 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC14.76□□□□□ -0.05
LIG3P49916 TRPM4-202ENST00000427978 3444 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 MTMR11-201ENST00000369140 2324 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
LIG3P49916 ZNF410-201ENST00000324593 2293 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIG3P49916 FAM90A11P-201ENST00000518378 2218 ntBASIC14.76□□□□□ -0.05
LIG3P49916 RN7SL832P-201ENST00000607781 1756 ntBASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms