Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
COL6A3P12111 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
COL6A3P12111 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC13.79□□□□□ -0.2
COL6A3P12111 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC13.79□□□□□ -0.2
COL6A3P12111 RPSAP19-201ENST00000431241 880 ntBASIC13.79□□□□□ -0.2
COL6A3P12111 RPL7AP4-201ENST00000483820 769 ntBASIC13.79□□□□□ -0.2
COL6A3P12111 AC124254.1-201ENST00000583629 562 ntTSL 4 BASIC13.79□□□□□ -0.2
COL6A3P12111 USP4-204ENST00000416417 1536 ntTSL 2 BASIC13.79□□□□□ -0.2
COL6A3P12111 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC13.79□□□□□ -0.2
COL6A3P12111 PITPNB-201ENST00000320996 2826 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A3P12111 LINC00888-202ENST00000471496 1490 ntTSL 3 BASIC13.78□□□□□ -0.2
COL6A3P12111 TCP1-215ENST00000544255 1403 ntTSL 5 BASIC13.78□□□□□ -0.2
COL6A3P12111 DOC2GP-204ENST00000639052 2548 ntBASIC13.78□□□□□ -0.2
COL6A3P12111 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A3P12111 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A3P12111 HOPX-209ENST00000508121 904 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
COL6A3P12111 MYCT1-202ENST00000529453 724 ntTSL 3 BASIC13.78□□□□□ -0.2
COL6A3P12111 OR5BA1P-201ENST00000529722 982 ntBASIC13.78□□□□□ -0.2
COL6A3P12111 AP001266.1-201ENST00000531155 1044 ntTSL 2 BASIC13.78□□□□□ -0.2
COL6A3P12111 MPHOSPH6-207ENST00000569021 392 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A3P12111 AC093159.2-201ENST00000603429 636 ntBASIC13.78□□□□□ -0.2
COL6A3P12111 AC079882.1-201ENST00000609433 375 ntBASIC13.78□□□□□ -0.2
COL6A3P12111 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A3P12111 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A3P12111 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A3P12111 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A3P12111 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A3P12111 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC13.78□□□□□ -0.2
COL6A3P12111 PRAMENP-203ENST00000548391 1445 ntBASIC13.78□□□□□ -0.2
COL6A3P12111 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A3P12111 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC13.78□□□□□ -0.2
COL6A3P12111 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A3P12111 RETREG3-203ENST00000585894 1733 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A3P12111 YBX1P9-201ENST00000441264 679 ntBASIC13.78□□□□□ -0.2
COL6A3P12111 COL18A1-AS2-201ENST00000446475 552 ntTSL 4 BASIC13.78□□□□□ -0.2
COL6A3P12111 RN7SL617P-201ENST00000485298 308 ntBASIC13.78□□□□□ -0.2
COL6A3P12111 MIR4695-201ENST00000577305 74 ntBASIC13.78□□□□□ -0.2
COL6A3P12111 AP000894.2-203ENST00000580612 439 ntTSL 3 BASIC13.78□□□□□ -0.2
COL6A3P12111 AC006262.2-202ENST00000600152 333 ntTSL 2 BASIC13.78□□□□□ -0.2
COL6A3P12111 AC012442.3-201ENST00000636053 940 ntTSL 5 BASIC13.78□□□□□ -0.2
COL6A3P12111 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A3P12111 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A3P12111 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC13.78□□□□□ -0.2
COL6A3P12111 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL6A3P12111 NME1-201ENST00000013034 796 ntTSL 3 BASIC13.77□□□□□ -0.2
COL6A3P12111 RPS21-202ENST00000370562 1002 ntTSL 2 BASIC13.77□□□□□ -0.2
COL6A3P12111 IGKV6-21-201ENST00000390256 406 ntAPPRIS P1 BASIC13.77□□□□□ -0.2
COL6A3P12111 AL445070.1-201ENST00000414631 714 ntTSL 3 BASIC13.77□□□□□ -0.2
COL6A3P12111 AL158824.1-201ENST00000451825 450 ntBASIC13.77□□□□□ -0.2
COL6A3P12111 LRP4-AS1-202ENST00000531719 731 ntTSL 4 BASIC13.77□□□□□ -0.2
COL6A3P12111 AC079602.2-201ENST00000538389 283 ntBASIC13.77□□□□□ -0.2
COL6A3P12111 AC027237.4-201ENST00000560870 694 ntTSL 3 BASIC13.77□□□□□ -0.2
COL6A3P12111 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL6A3P12111 DDX19B-202ENST00000355992 1692 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
COL6A3P12111 BSCL2-203ENST00000360796 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL6A3P12111 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL6A3P12111 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
COL6A3P12111 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC13.77□□□□□ -0.2
COL6A3P12111 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
COL6A3P12111 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL6A3P12111 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL6A3P12111 AL365203.3-201ENST00000609742 2057 ntBASIC13.77□□□□□ -0.2
COL6A3P12111 LMO1-201ENST00000335790 1279 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A3P12111 AL512288.2-201ENST00000426041 367 ntBASIC13.77□□□□□ -0.21
COL6A3P12111 LINC00332-201ENST00000455241 834 ntTSL 3 BASIC13.77□□□□□ -0.21
COL6A3P12111 AP003469.2-201ENST00000524369 430 ntTSL 3 BASIC13.77□□□□□ -0.21
COL6A3P12111 RAB2A-208ENST00000529579 680 ntTSL 2 BASIC13.77□□□□□ -0.21
COL6A3P12111 AL133372.2-202ENST00000549360 768 ntTSL 3 BASIC13.77□□□□□ -0.21
COL6A3P12111 AC133539.1-201ENST00000562644 420 ntTSL 5 BASIC13.77□□□□□ -0.21
COL6A3P12111 AC087289.4-201ENST00000587348 230 ntTSL 3 BASIC13.77□□□□□ -0.21
COL6A3P12111 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A3P12111 AC005549.1-201ENST00000579438 1629 ntBASIC13.77□□□□□ -0.21
COL6A3P12111 ZDHHC8P1-202ENST00000418264 1403 ntBASIC13.77□□□□□ -0.21
COL6A3P12111 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A3P12111 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A3P12111 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A3P12111 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A3P12111 AC111188.1-201ENST00000525758 1833 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A3P12111 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC13.77□□□□□ -0.21
COL6A3P12111 GGNBP1-201ENST00000374458 960 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A3P12111 MIR646HG-204ENST00000427820 805 ntTSL 5 BASIC13.77□□□□□ -0.21
COL6A3P12111 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC13.77□□□□□ -0.21
COL6A3P12111 LINC00106-201ENST00000430235 370 ntTSL 2 BASIC13.77□□□□□ -0.21
COL6A3P12111 AC008040.3-201ENST00000493762 1232 ntBASIC13.77□□□□□ -0.21
COL6A3P12111 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A3P12111 VEGFA-224ENST00000523873 784 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A3P12111 AL138828.1-208ENST00000585946 824 ntTSL 5 BASIC13.77□□□□□ -0.21
COL6A3P12111 SMIM22-204ENST00000588606 394 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
COL6A3P12111 AC112236.2-201ENST00000608402 845 ntBASIC13.77□□□□□ -0.21
COL6A3P12111 CU638689.3-201ENST00000624266 1031 ntBASIC13.77□□□□□ -0.21
COL6A3P12111 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
COL6A3P12111 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC13.76□□□□□ -0.21
COL6A3P12111 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC13.76□□□□□ -0.21
COL6A3P12111 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A3P12111 CCDC32-214ENST00000561011 1577 ntTSL 2 BASIC13.76□□□□□ -0.21
COL6A3P12111 ERGIC3-202ENST00000348547 1359 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A3P12111 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A3P12111 HLA-DRA-201ENST00000374982 1169 ntBASIC13.76□□□□□ -0.21
COL6A3P12111 TROAP-202ENST00000380327 675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A3P12111 TACR1-202ENST00000409848 1270 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms