Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 HTR3E-206ENST00000440596 1449 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 ARHGAP23P1-201ENST00000562773 1937 ntBASIC12.53□□□□□ -0.4
CHD8Q9HCK8 SPATA22-203ENST00000397168 1457 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 TMEM176A-201ENST00000004103 1261 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 FAM138A-201ENST00000417324 1187 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 COL18A1-AS2-201ENST00000446475 552 ntTSL 4 BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 AC104333.3-201ENST00000449334 479 ntBASIC12.53□□□□□ -0.4
CHD8Q9HCK8 AC022483.2-201ENST00000461464 555 ntBASIC12.53□□□□□ -0.4
CHD8Q9HCK8 FAM138D-201ENST00000504074 1187 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 FAM138E-201ENST00000507796 1187 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 AP003108.1-201ENST00000534856 554 ntTSL 4 BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 AC073578.1-201ENST00000535133 493 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 AL354993.2-201ENST00000558738 542 ntTSL 4 BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 GDPD1-205ENST00000581140 1265 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 SRGAP3-AS2-203ENST00000600323 1294 ntTSL 5 BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 Metazoa_SRP.85-201ENST00000610909 260 ntBASIC12.53□□□□□ -0.4
CHD8Q9HCK8 Metazoa_SRP.163-201ENST00000611926 277 ntBASIC12.53□□□□□ -0.4
CHD8Q9HCK8 CGREF1-209ENST00000640154 336 ntTSL 5 BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 AC099689.1-201ENST00000624383 1302 ntBASIC12.53□□□□□ -0.4
CHD8Q9HCK8 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHD8Q9HCK8 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
CHD8Q9HCK8 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
CHD8Q9HCK8 AC132872.4-202ENST00000622924 2756 ntBASIC12.52□□□□□ -0.4
CHD8Q9HCK8 ANKDD1A-207ENST00000496660 1477 ntTSL 2 BASIC12.52□□□□□ -0.4
CHD8Q9HCK8 NELL2-203ENST00000429094 3612 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CHD8Q9HCK8 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
CHD8Q9HCK8 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CHD8Q9HCK8 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CHD8Q9HCK8 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC12.52□□□□□ -0.4
CHD8Q9HCK8 SCGB1C1-201ENST00000342878 431 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CHD8Q9HCK8 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC12.52□□□□□ -0.4
CHD8Q9HCK8 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CHD8Q9HCK8 BBOX1-AS1-203ENST00000530430 879 ntTSL 4 BASIC12.52□□□□□ -0.4
CHD8Q9HCK8 BBOX1-AS1-204ENST00000531363 745 ntTSL 2 BASIC12.52□□□□□ -0.4
CHD8Q9HCK8 LINC02074-201ENST00000581028 569 ntTSL 4 BASIC12.52□□□□□ -0.4
CHD8Q9HCK8 LINC02074-202ENST00000584003 573 ntTSL 4 BASIC12.52□□□□□ -0.4
CHD8Q9HCK8 BLVRB-202ENST00000595483 649 ntTSL 2 BASIC12.52□□□□□ -0.4
CHD8Q9HCK8 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CHD8Q9HCK8 AC245140.2-201ENST00000624054 1939 ntBASIC12.52□□□□□ -0.4
CHD8Q9HCK8 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 KRT8P24-201ENST00000560290 1559 ntBASIC12.52□□□□□ -0.41
CHD8Q9HCK8 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 THYN1-202ENST00000352327 835 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 RPL15-202ENST00000354811 820 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 CXorf40B-201ENST00000355203 1067 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 TRIM15-206ENST00000376688 426 ntTSL 5 BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 CR769775.1-203ENST00000399894 579 ntTSL 3 BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 PQLC2L-204ENST00000459838 850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 PQLC2L-206ENST00000468043 883 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 TMEM255B-205ENST00000488362 694 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 MIR7847-201ENST00000610912 103 ntBASIC12.52□□□□□ -0.41
CHD8Q9HCK8 AC009118.3-201ENST00000622896 873 ntBASIC12.52□□□□□ -0.41
CHD8Q9HCK8 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 USP35-204ENST00000530267 2419 ntTSL 2 BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CHD8Q9HCK8 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHD8Q9HCK8 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC12.51□□□□□ -0.41
CHD8Q9HCK8 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHD8Q9HCK8 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
CHD8Q9HCK8 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CHD8Q9HCK8 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC12.51□□□□□ -0.41
CHD8Q9HCK8 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC12.51□□□□□ -0.41
CHD8Q9HCK8 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CHD8Q9HCK8 STAMBP-204ENST00000409707 1649 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CHD8Q9HCK8 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHD8Q9HCK8 HTATSF1P1-201ENST00000432008 984 ntBASIC12.51□□□□□ -0.41
CHD8Q9HCK8 OVOL1-AS1-203ENST00000534178 493 ntTSL 2 BASIC12.51□□□□□ -0.41
CHD8Q9HCK8 CIPC-206ENST00000555611 599 ntTSL 4 BASIC12.51□□□□□ -0.41
CHD8Q9HCK8 FAM231B-201ENST00000600179 510 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
CHD8Q9HCK8 MIR1914-201ENST00000607800 80 ntBASIC12.51□□□□□ -0.41
CHD8Q9HCK8 AL596094.1-201ENST00000608273 276 ntTSL 2 BASIC12.51□□□□□ -0.41
CHD8Q9HCK8 Metazoa_SRP.97-201ENST00000618280 304 ntBASIC12.51□□□□□ -0.41
CHD8Q9HCK8 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
CHD8Q9HCK8 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms