Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AC006449.2-201ENST00000618407 486 ntTSL 2 BASIC22■■□□□ 1.11
IFT140Q96RY7 ATXN10-212ENST00000640901 1185 ntTSL 5 BASIC22■■□□□ 1.11
IFT140Q96RY7 AC091807.1-201ENST00000418838 1544 ntBASIC22■■□□□ 1.11
IFT140Q96RY7 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
IFT140Q96RY7 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC22■■□□□ 1.11
IFT140Q96RY7 C1QTNF3-201ENST00000231338 1959 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
IFT140Q96RY7 ZNF595-203ENST00000608255 1999 ntTSL 2 BASIC22■■□□□ 1.11
IFT140Q96RY7 Z97653.2-201ENST00000623057 1418 ntBASIC22■■□□□ 1.11
IFT140Q96RY7 POTEC-201ENST00000358970 1629 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
IFT140Q96RY7 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
IFT140Q96RY7 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 FAM90A22P-201ENST00000400142 1395 ntBASIC21.99■■□□□ 1.11
IFT140Q96RY7 FP671120.1-201ENST00000623664 2498 ntTSL 2 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 FP236383.1-201ENST00000623860 2498 ntTSL 2 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 AC012370.2-204ENST00000601940 1320 ntTSL 5 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
IFT140Q96RY7 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
IFT140Q96RY7 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 CDKN2AIPNLP2-201ENST00000274516 352 ntBASIC21.99■■□□□ 1.11
IFT140Q96RY7 NDUFB11-201ENST00000276062 948 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
IFT140Q96RY7 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 PRDX4-201ENST00000379331 852 ntTSL 2 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 PIN1P1-202ENST00000439639 301 ntBASIC21.99■■□□□ 1.11
IFT140Q96RY7 HINT1-204ENST00000506908 681 ntTSL 2 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 SLC25A5P6-201ENST00000515328 886 ntBASIC21.99■■□□□ 1.11
IFT140Q96RY7 AC133539.1-201ENST00000562644 420 ntTSL 5 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 AC008915.2-201ENST00000570080 730 ntTSL 5 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 AC005154.1-227ENST00000579174 755 ntTSL 3 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 METTL23-211ENST00000589977 617 ntTSL 3 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 AC068134.4-201ENST00000613365 122 ntBASIC21.99■■□□□ 1.11
IFT140Q96RY7 CR392039.2-201ENST00000623182 509 ntBASIC21.99■■□□□ 1.11
IFT140Q96RY7 UBR1-212ENST00000627960 189 ntTSL 5 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 PUDPP2-202ENST00000628080 737 ntTSL 5 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
IFT140Q96RY7 HOXA1-202ENST00000355633 2016 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
IFT140Q96RY7 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
IFT140Q96RY7 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
IFT140Q96RY7 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
IFT140Q96RY7 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
IFT140Q96RY7 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 AP001258.1-201ENST00000501817 2110 ntTSL 5 BASIC21.99■■□□□ 1.11
IFT140Q96RY7 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
IFT140Q96RY7 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
IFT140Q96RY7 SLC29A3-201ENST00000373189 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
IFT140Q96RY7 LINC02381-202ENST00000635070 1341 ntTSL 5 BASIC21.98■■□□□ 1.11
IFT140Q96RY7 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
IFT140Q96RY7 ROPN1B-201ENST00000251776 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
IFT140Q96RY7 IGHV1-45-201ENST00000390621 411 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
IFT140Q96RY7 AIMP2-203ENST00000400479 1107 ntTSL 5 BASIC21.98■■□□□ 1.11
IFT140Q96RY7 RN7SKP195-201ENST00000516587 303 ntBASIC21.98■■□□□ 1.11
IFT140Q96RY7 GINS4-203ENST00000518671 1158 ntAPPRIS P1 TSL 3 BASIC21.98■■□□□ 1.11
IFT140Q96RY7 OR5BA1P-201ENST00000529722 982 ntBASIC21.98■■□□□ 1.11
IFT140Q96RY7 AL669831.3-208ENST00000634337 891 ntTSL 5 BASIC21.98■■□□□ 1.11
IFT140Q96RY7 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
IFT140Q96RY7 LILRB4-205ENST00000430952 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
IFT140Q96RY7 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
IFT140Q96RY7 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC21.98■■□□□ 1.11
IFT140Q96RY7 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC21.98■■□□□ 1.11
IFT140Q96RY7 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
IFT140Q96RY7 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
IFT140Q96RY7 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
IFT140Q96RY7 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
IFT140Q96RY7 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
IFT140Q96RY7 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
IFT140Q96RY7 BANP-201ENST00000286122 2368 ntTSL 5 BASIC21.98■■□□□ 1.11
IFT140Q96RY7 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
IFT140Q96RY7 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
IFT140Q96RY7 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
IFT140Q96RY7 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
IFT140Q96RY7 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
IFT140Q96RY7 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC21.98■■□□□ 1.11
IFT140Q96RY7 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
IFT140Q96RY7 AC135506.1-201ENST00000603877 1799 ntBASIC21.97■■□□□ 1.11
IFT140Q96RY7 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC21.97■■□□□ 1.11
IFT140Q96RY7 MIR4435-2HG-201ENST00000308604 552 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
IFT140Q96RY7 SH3BGRL3-202ENST00000319041 768 ntTSL 2 BASIC21.97■■□□□ 1.11
IFT140Q96RY7 IGLV3-21-201ENST00000390308 602 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
IFT140Q96RY7 ZNF662-202ENST00000422021 436 ntTSL 2 BASIC21.97■■□□□ 1.11
IFT140Q96RY7 CRYAB-213ENST00000533475 1119 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
IFT140Q96RY7 SLIRP-209ENST00000557342 408 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
IFT140Q96RY7 SLIRP-211ENST00000557623 865 ntTSL 2 BASIC21.97■■□□□ 1.11
IFT140Q96RY7 SALL1-204ENST00000566102 565 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
IFT140Q96RY7 SMIM6-202ENST00000579469 957 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
IFT140Q96RY7 MIR663AHG-218ENST00000598448 804 ntTSL 5 BASIC21.97■■□□□ 1.11
IFT140Q96RY7 MIR1914-201ENST00000607800 80 ntBASIC21.97■■□□□ 1.11
IFT140Q96RY7 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC21.97■■□□□ 1.11
IFT140Q96RY7 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC21.97■■□□□ 1.11
IFT140Q96RY7 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
IFT140Q96RY7 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
IFT140Q96RY7 ST5-258ENST00000534278 1352 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
IFT140Q96RY7 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
IFT140Q96RY7 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
IFT140Q96RY7 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
IFT140Q96RY7 ALDH7A1-234ENST00000637782 1773 ntAPPRIS ALT1 TSL 5 BASIC21.97■■□□□ 1.11
IFT140Q96RY7 SULT1A3-202ENST00000395138 1326 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms