Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 GPN1-211ENST00000610189 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SHROOM3Q8TF72 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
SHROOM3Q8TF72 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.16□□□□□ -0.14
SHROOM3Q8TF72 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SHROOM3Q8TF72 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SHROOM3Q8TF72 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SHROOM3Q8TF72 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 DYRK4-201ENST00000010132 1840 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 KIR2DL3-201ENST00000342376 1590 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 GRPEL2P1-201ENST00000453145 339 ntBASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 AC005632.3-201ENST00000605544 308 ntBASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 AC084781.1-201ENST00000613737 656 ntBASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 AC051619.9-201ENST00000623237 597 ntBASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SHROOM3Q8TF72 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 LDLRAD3-202ENST00000524419 1996 ntTSL 5 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 RPL8P2-201ENST00000430538 502 ntBASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 NT5C-204ENST00000578337 582 ntTSL 2 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 PLS3-210ENST00000626746 216 ntTSL 4 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 OR2I1P-210ENST00000642037 4691 ntBASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 AC125807.2-201ENST00000513358 3514 ntBASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 ABCD1P2-201ENST00000429313 1601 ntBASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 RTN3-210ENST00000540798 3124 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 PHB-210ENST00000511832 1509 ntTSL 2 BASIC14.14□□□□□ -0.15
SHROOM3Q8TF72 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms